Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3005 ATGGGCGAGgaagaaaagaaagcaGAGGGAAGCAAAGCGGAGGAGGAGAAAAAAACAGAGGAAccaaagaaggaagaagagaagaaagaggaagCGAAGAAACCGGACGAGGAGAAAAAACCGGAGGAATCAAAAGATGACAAGGAATCCAAGGAAGAAGCTGCGCCGCCAGAAATTGTGCTTAAAGTGTTCATGCATTGCGAAGGTTGTGCTCGCAAGGTTCGTCGGTCCCTCAAAGGATTCCCAGGTGAGAacgagtgtgtgtgtgtgtgtgtcacttttgtttttaagccttttattttcGCACGTTGTCTGATTCTAGACTTTGTCCGAATTTCAGGGGTGGATGTTATACTCACGGATTGCAAGTCTCACAAGGTGGTCGTGAAAGGAGAAAAAGCGGATCCGCTGAAGGTTCTAGAGAGAGTACAGAGGAAGAGCCATAGAAAGGTAGAGCTTCTCTCTCCCATCCCGAAACCACCCGCGGAAGAGGAGATAAAAccggaagagaaagagaagccCAACCCAGAGGAGAACAAAGAAGAGCCTCAGGCTATCGCAGTTGTTCTGAAAGTTCACATGCATTGCGAAGCTTGCGCGCAGGAAATCAAGAGACGCATCGAGAGAATGAAAGGGGTGGAATCGGCGGAGCCGGATCTGAAGAGCTCGCAGGTGAGCGTGAAGGGGGTGTTCGAGACAGCGAAGTTGGTGGAGCACGTGTACAAGAGGACGGGGAAGCATGCGGTGATAGTGAAGGAAGAGCcggagaagaaggaggaagccaaagaggagaagaaagcAGGGGAAGGTGACAAGAAGGGTGAGAAGGGAAGTGGTGAGGGAGAGGAAAACAAGGAGAAGAAAGGAGGAGAGGGTGAAGCCAAACCAGCTGAGGTAGCTTCAGAAGAAACCACGGTGGTGGAGTTGAAGAAGAATGAGTACTATTACAACCCACCAAGCATGGGGTTTTTCCATGCATACCCTGGGCAAGGGCAAGACTACCCGCCGCAGATCTTCAGTGATGAGAACCCCAATGCATGCTCTGTCATGTAA 1053 0.4368 MGEEEKKAEGSKAEEEKKTEEPKKEEEKKEEAKKPDEEKKPEESKDDKESKEEAAPPEIVLKVFMHCEGCARKVRRSLKGFPGENECVCVCVTFVFKPFIFARCLILDFVRISGVDVILTDCKSHKVVVKGEKADPLKVLERVQRKSHRKVELLSPIPKPPAEEEIKPEEKEKPNPEENKEEPQAIAVVLKVHMHCEACAQEIKRRIERMKGVESAEPDLKSSQVSVKGVFETAKLVEHVYKRTGKHAVIVKEEPEKKEEAKEEKKAGEGDKKGEKGSGEGEENKEKKGGEGEAKPAEVASEETTVVELKKNEYYYNPPSMGFFHAYPGQGQDYPPQIFSDENPNACSVM 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3005 350 Gene3D - 54 159 - -
Ssu5g3005 350 CDD HMA 65 152 IPR006121 GO:0046872
Ssu5g3005 350 MobiDBLite consensus disorder prediction 252 304 - -
Ssu5g3005 350 ProSiteProfiles Heavy-metal-associated domain profile. 194 250 IPR006121 GO:0046872
Ssu5g3005 350 MobiDBLite consensus disorder prediction 157 181 - -
Ssu5g3005 350 CDD HMA 189 248 IPR006121 GO:0046872
Ssu5g3005 350 Pfam Heavy-metal-associated domain 190 246 IPR006121 GO:0046872
Ssu5g3005 350 MobiDBLite consensus disorder prediction 162 180 - -
Ssu5g3005 350 Gene3D - 183 251 - -
Ssu5g3005 350 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 14 350 - -
Ssu5g3005 350 SUPERFAMILY HMA, heavy metal-associated domain 188 250 IPR036163 GO:0046872
Ssu5g3005 350 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 14 350 IPR044577 GO:0046872
Ssu5g3005 350 MobiDBLite consensus disorder prediction 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3005 Ssu-Chr5 77228114 77229772 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3005 - - gmx:100796289 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2399 1 66789950 66791670 Ssu5g3005 5 77228114 77229772 ECH
Ssu5g3005 5 77228114 77229772 Ssu5g3005 5 77228114 77229772 ECH
Ssu5g3005 5 77228114 77229772 Ssu1g2399 1 66789950 66791670 PCT