Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2399 ATGGGGGAGGAGGAAAAGAAACCAGAGGAGCCCAAGGCAGAGGAGAAAAAACCAGAGGAACCCAAAAAGacagaagagaaaaaggaagaagcaGCCAAGCCCGCGGAAGTTGCTCCTCCACCGCCACCGCCCGAGATTGTGCTCAAAGTGTTCATGCATTGCGAGGGTTGCGCTCGCAAGGTTCGTCGCTCCCTCAGAGAATTCCCAGGTGTTGAAGCTGTGGTCACCGATTGCAAATCTCACAAGGTGGTTGTGAAGGGAGAGAAAGCGGATCCGCTGAAGGTTTTGGAGAGAATACAGAGAAAAAGTCACCGGCAGGTCGAGCTTCTTTCTCCGATCCCGAAACCTCCAGAGGAGAAGAAGGTCCAAGAGGAAGAGAAGCCCAAGCCCAAGCccgaagagaagaaagaagagCCTCAGATTATTGTGACGGTTCTGAAAGTTCACATGCATTGCGAAGCTTGTGCTCAGGAAATCAAGAGACGCATACAGAGAATGAAGGGAGTGGAATCGGCGGAACCCGATCTGAAGAGCTCGCAAGTGAGCGTGAAGGGCGTGTATGATCCTGCGAAGTTGGTTGAGTACTTGTACAAGAGAACCGGGAAGCAAGCAGTGATCGTGAAGCAAGAGccagaaaagaaagagaaagtggaGGAAGCGAAAGAGGAGGATGgtgagaaagagaagaagagtgGTGGGGAAGGGGAAAACAACaaggagaagaaggaagaagcaAAGGGCGAGGCCAAAGCAGAGGAAGAAGCAGCGGCAGCATCTGCTGAAGAGAGCAACAAGGTGGTGCCAGAGGTGAAGATAAACGAATACTACTATAACCCACCAAGGTATGGCATGGAGGTGTATGCATACCCTGCACACCCAGCATACCCTGTATACCCAGCACACCCTTTACACCCTGCGTATTACCAACCAGAGTACCCACCCCAGTTCTTCAGCGATGAGAACCCAAATGCCTGCACTGTCATGTAA 987 0.4661 MGEEEKKPEEPKAEEKKPEEPKKTEEKKEEAAKPAEVAPPPPPPEIVLKVFMHCEGCARKVRRSLREFPGVEAVVTDCKSHKVVVKGEKADPLKVLERIQRKSHRQVELLSPIPKPPEEKKVQEEEKPKPKPEEKKEEPQIIVTVLKVHMHCEACAQEIKRRIQRMKGVESAEPDLKSSQVSVKGVYDPAKLVEYLYKRTGKQAVIVKQEPEKKEKVEEAKEEDGEKEKKSGGEGENNKEKKEEAKGEAKAEEEAAAASAEESNKVVPEVKINEYYYNPPRYGMEVYAYPAHPAYPVYPAHPLHPAYYQPEYPPQFFSDENPNACTVM 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2399 328 SUPERFAMILY HMA, heavy metal-associated domain 143 206 IPR036163 GO:0046872
Ssu1g2399 328 Gene3D - 43 115 - -
Ssu1g2399 328 SUPERFAMILY HMA, heavy metal-associated domain 47 102 IPR036163 GO:0046872
Ssu1g2399 328 MobiDBLite consensus disorder prediction 104 138 - -
Ssu1g2399 328 Pfam Heavy-metal-associated domain 48 102 IPR006121 GO:0046872
Ssu1g2399 328 Pfam Heavy-metal-associated domain 146 194 IPR006121 GO:0046872
Ssu1g2399 328 MobiDBLite consensus disorder prediction 1 46 - -
Ssu1g2399 328 ProSiteProfiles Heavy-metal-associated domain profile. 52 108 IPR006121 GO:0046872
Ssu1g2399 328 Coils Coil 235 262 - -
Ssu1g2399 328 Gene3D - 140 207 - -
Ssu1g2399 328 CDD HMA 145 204 IPR006121 GO:0046872
Ssu1g2399 328 MobiDBLite consensus disorder prediction 210 264 - -
Ssu1g2399 328 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 1 328 IPR044577 GO:0046872
Ssu1g2399 328 MobiDBLite consensus disorder prediction 1 34 - -
Ssu1g2399 328 MobiDBLite consensus disorder prediction 114 138 - -
Ssu1g2399 328 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 1 328 - -
Ssu1g2399 328 MobiDBLite consensus disorder prediction 210 259 - -
Ssu1g2399 328 CDD HMA 52 108 IPR006121 GO:0046872
Ssu1g2399 328 ProSiteProfiles Heavy-metal-associated domain profile. 150 206 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2399 Ssu-Chr1 66789950 66791670 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2399 - - gmx:100787932 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2399 1 66789950 66791670 Ssu5g3005 5 77228114 77229772 ECH
Ssu1g2399 1 66789950 66791670 Ssu1g2399 1 66789950 66791670 ECH
Ssu5g3005 5 77228114 77229772 Ssu1g2399 1 66789950 66791670 PCT