Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2988 ATGGCCATGCATCGCGAGTCTTGGGCTTTTGTGTTCGGCCTTTTGGGCAACATCATCTCCTTTGGAGTGTTCCTTGCTCCATTACCAACCTTTTACCAAATCTACAAGAAGAAATCCACTGAAGGGTTCCAGTCACTTCCTTATGTTGTTGCACTTTTCAGTGCAATGCTTTGGATTTACTATGCATTCGTCAAGAGGGAAGCTGCCCTCCTTCTCATTACCATTAACACGTTTGGAATTGTTGTGGAAACAATTTACCTTGCAATCTTCCTATTTTATGCCCCAAGGAAGCCTAGGCTTCAAACCATCAAGCTTCTTCTCTTGCTGAATGTGTTTGGGTTCGGAGCCATGCTTCTAGCAACTCTCTACCTGTCAAAGGGAGCAAAGCGTCTTGCTATCATAGGATGGATTTGCCTGGTTTTCAACATAAGTGTCTTTGCTGCGCCTCTCTTCATTATtAGGCGAGTCATAAAGACCAGGAGCGTGGAATACATGCCTTTTACTTTGTCCATGTTTTTAACCATCAATGCTGTTATGTGGTTCTTCTATGGCCTTCTCCTCAGGGATTATTACGTTGCACTTCCAAACACACTTGGGTTTTTGTTCGGCTTAGTTCAGATGGTGATGTATATGATGTACAGAAACGCCACGCCACTAGTAGAGCCAGTGAAGGCGCAAGAATTGAATGGCCACATCATTGACGTTGTGAAGATGGGAACAATGGTACCTTCCGACCCGAATCATGCAGCCACTGGTGGTGCTGTTGGCAAAGTCTGA 777 0.4479 MAMHRESWAFVFGLLGNIISFGVFLAPLPTFYQIYKKKSTEGFQSLPYVVALFSAMLWIYYAFVKREAALLLITINTFGIVVETIYLAIFLFYAPRKPRLQTIKLLLLLNVFGFGAMLLATLYLSKGAKRLAIIGWICLVFNISVFAAPLFIIRRVIKTRSVEYMPFTLSMFLTINAVMWFFYGLLLRDYYVALPNTLGFLFGLVQMVMYMMYRNATPLVEPVKAQELNGHIIDVVKMGTMVPSDPNHAATGGAVGKV 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2988 258 PANTHER RAG1-ACTIVATING PROTEIN 1 4 255 - -
Ssu5g2988 258 Gene3D - 11 97 - -
Ssu5g2988 258 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET 4 255 - -
Ssu5g2988 258 Pfam Sugar efflux transporter for intercellular exchange 133 216 IPR004316 GO:0016021
Ssu5g2988 258 Pfam Sugar efflux transporter for intercellular exchange 11 97 IPR004316 GO:0016021
Ssu5g2988 258 Gene3D - 129 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2988 Ssu-Chr5 76903674 76905964 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2988 1 243 Miscellaneous Gene Families AT5G50800 57.959 6.62e-100 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2988 K15382 - gmx:100810946 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2988 5 76903674 76905964 Ssu5g2988 5 76903674 76905964 ECH
Ssu5g2988 5 76903674 76905964 Ssu1g2412 1 67320177 67349624 PCT