Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2987 ATGGGAAAGGAGAGAGCAAATAATAGAGAGGGTCACGTGAGGGGGGAAACAGGGAGGGAAGGTTTGTCATTGGAAAAGATAGATGAGAAGCTAAGGCATTTTCAGCGCGTAACACGGCGTGAACACACAAAGCTAGAGCTACCTTCCTTTCAAACCTtccttctcttctctcctttttcAATCAAGGGAATATTTCTCAGATATTCCGAAACCATGGCTCGCGACACTCCTATGGTTTTTGTTGTTGGAATTCTAGGTATCCTTGTCTCCTTCTGTTGCTTTCTAGCACCAGTACCAACATTTTATCGAGTTTGTAAGAAGAAAACCACCGAAGGTTACCAATCACTTCCTTATGTGGCTGCACTCTTCACTTCAATGCTTTGGATTTTTTATGCCTACATAAAGACGGGCGAAATACTTCTTATCATCATCAACGCATTCGGCTGTTTCATAGAGACAGTTTACCTTGTCATCTATATCACTTATTGCCCCAAGAAAGCTAGGTACTTTACCTTTAAGATGATTTTCTTGTTCAACGTTGGGGTGATTTTCTTGGTTATTCTTCTTACCCACGTTCTAGCAAAAGAACGAACAGCCCGTATCGAGCTTCTTGGATGGATTTGTGTTGTCCTTTCTACCAGTGTGTTTGCAGCACCTTTAAGCATTATTAAAGTGGTTATTCGCACCAAAAGTGTAGAGTTCATGCCTATTACTCTGTCAATCCTCCTCACAGTAAGTGCAATTATGTGGATGGCTTACGGTATTCTCCTGAGGGACATCTATGTTACACTTCCGAACTTTGTGGGTGTCACATTTGGAACAATTCAGATAGTGCTCTATTTAATATACCGAAAGAACAAGCCCGTCAAGGATCAAAAGCTGCCAGAACAAAAAGACGATGTTATCAATGATGAAAACGCTAACACAACTGTGAGTGATGGGAATCAGGGAGCAAACGCTGGACTCGTTGATATCGAGATTGgagagaagaaggaagagaagcAAGTTCAGGAAGCAGAGAAAAAACAGGACCAAATTGTTAATGCTCGTGACCAAACAGAgtacaacaacaatagcaacaaaacAAGGGAAGgcattcaacaacaacaacataaggaAGGTTGA 1125 0.3831 MGKERANNREGHVRGETGREGLSLEKIDEKLRHFQRVTRREHTKLELPSFQTFLLFSPFSIKGIFLRYSETMARDTPMVFVVGILGILVSFCCFLAPVPTFYRVCKKKTTEGYQSLPYVAALFTSMLWIFYAYIKTGEILLIIINAFGCFIETVYLVIYITYCPKKARYFTFKMIFLFNVGVIFLVILLTHVLAKERTARIELLGWICVVLSTSVFAAPLSIIKVVIRTKSVEFMPITLSILLTVSAIMWMAYGILLRDIYVTLPNFVGVTFGTIQIVLYLIYRKNKPVKDQKLPEQKDDVINDENANTTVSDGNQGANAGLVDIEIGEKKEEKQVQEAEKKQDQIVNARDQTEYNNNSNKTREGIQQQQHKEG 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2987 374 MobiDBLite consensus disorder prediction 293 374 - -
Ssu5g2987 374 MobiDBLite consensus disorder prediction 349 365 - -
Ssu5g2987 374 Gene3D - 199 294 - -
Ssu5g2987 374 Pfam Sugar efflux transporter for intercellular exchange 203 287 IPR004316 GO:0016021
Ssu5g2987 374 Pfam Sugar efflux transporter for intercellular exchange 81 167 IPR004316 GO:0016021
Ssu5g2987 374 PANTHER RAG1-ACTIVATING PROTEIN 1 75 364 - -
Ssu5g2987 374 Coils Coil 322 352 - -
Ssu5g2987 374 MobiDBLite consensus disorder prediction 325 348 - -
Ssu5g2987 374 Gene3D - 79 169 - -
Ssu5g2987 374 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET 75 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2987 Ssu-Chr5 76872399 76874765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2987 80 302 Miscellaneous Gene Families AT5G23660 52.381 2.24e-81 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2987 K15382 - gmx:100801430 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2987 5 76872399 76874765 Ssu5g2987 5 76872399 76874765 ECH
Ssu5g2987 5 76872399 76874765 Ssu1g2413 1 67383767 67385486 PCT