Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2986 ATGCAGCCACCGCAACCGCAACCGCAACTGCCGGAGAATCCAGATTCCAGCGCTACCTTCGCTCCCTCACTGGTCAGAACTTACCGCGTCTGGCAAGGAGATAACaaatttcTTTTTGGAGGGAGGCTTATATTTGGGCCTGATGTCAAAATTATATTCGTATCgatttttcttattgttgccCCCGTCGCTGTGTTCTGTGCTATGGTAGCAAGGAAATTATTAGATGATTTTCCTCATCACGCCGGATGGTCAATAATGGCTGTGATTATTGCTCTCACACTGTTCGTTCTGATCAACCTTCTAGTGACCTCAGGAAGTGATCCAGGCATAGTACCTCGTAATGCTCATCCTCCGGAGCCAGATGACTATCATGCGACTGACAATGGCAGCAATGGACAAAGTCCATTGTCATGCTTGCCATTGACAAAGGATGTAATAGTCAATGGTATAACAGTGAAAGTCAAATATTGTGATACTTGCATGCTCTATAGACCCCCCCGCACTTCTCATTGTTCAGTCTGTGATAACTGCGTGGAGCGATTTGATCATCACTGCCCATGGGTGGGTCAGTGTATTGGACTGCGAAATTACCGGTTCTTCTACATGTTTGTATTCTCTGCCACTCTGCTTTGCTTGTATGTACATGCCTTTTGCTGGGTCAGCATTAGGAGGATCAAGGACTCCGAGGAAATATCAATTTGGAAAGCAATGACCAAAACTCCTGCGTCCATTGCACTAATAATCTACACCTTCTTTTTTGTCTGGTTTGTTGGCGGCCTCACTGTTTTCCACACGTACCTTATCAGCAGAAACCAGTCTACTTACGAAAATGCTAAATACCCGTGTGACCCACGAGACAACCCATATAACAGAGGGATAATTAACAACTTCAAAGAAATATTTTGCACTAGGATTCCTCCATCCAAGAACAATTTCAGGTCCAAGGTTCCAAGGGAGTCATTAGATTTATATCAAAGAACAGGTATTGGGCCCCTCAGGCCTATGATGAGAACTACCGGGAATATGGAATTGGTAGGGAGTTCAGTTCACAATGATCCACACGAGGGGGAAAGTGATTATAGAGATGAGTTTGGCAGTGAGGCTCCTAGCAAAGAAAGTTCACTACATAATCctttgttggaaataattctagAGCCTATGAACCAAATGAGAAGttataatgaaccaaatgaggaGGAAAGTGGTTATAGAGATGGGTTTGACAATGAGGCACCTAGCAAAGAAAGTTCACTTGCTAAACACCCTCTATTGCCAATGACTCTAGAAGAGCCAATGAACCAAACCAGGAGTTACAATAAACCAAGTGAGGTGGAAAGTGGTTATAGAAAGGGGTTTGACAATGAAGCACCTGGCAAAGAAAGTTCACTTGATAAACACCCTAGGTGGGGAATAACTCCAGAAGAACCAATGAATCAAATGAGGAATTGCATTGAACCAAATGAGGAGGAAAGTGGTTATAGAGACGGGTTTGACAATGAGGCACCTAATAAAAGTTCAGTTAGTAGACAATCTCTGTGGAAAATAACTCAAGAAAAACCAATGAACCAAATGACGAGTTGCAATGAACCAAACAAGGAGGAAAGTGGTTATAGAGTTGGGTTTGACAATGAGGCACCTAGCAAAGAAAGTTCACTTGGTAGACACCCTCTATGGGAAATAACTCCAGAAGAACCAATGAACCAAACAAGGAGTTTCAAGGAACCAAACAGGGAGGAAAGTGGTTTGAGAGATGGGTTTGACAACGAGGCACCTAGCAAAGAAAGTTCACTTGATAGACACTCTCTAGGGAAAATAACTCCAGAAGAACCAATGAACCAAACAAGGACTTACAATGAATCAAATGAGAAGGAAAGTGATTATAGAGATGAGTTTGACAATGAGGCACAAAGTAAAGAAAGTTCACTTAGTAGACACCCTCTGTGA 1947 0.416 MQPPQPQPQLPENPDSSATFAPSLVRTYRVWQGDNKFLFGGRLIFGPDVKIIFVSIFLIVAPVAVFCAMVARKLLDDFPHHAGWSIMAVIIALTLFVLINLLVTSGSDPGIVPRNAHPPEPDDYHATDNGSNGQSPLSCLPLTKDVIVNGITVKVKYCDTCMLYRPPRTSHCSVCDNCVERFDHHCPWVGQCIGLRNYRFFYMFVFSATLLCLYVHAFCWVSIRRIKDSEEISIWKAMTKTPASIALIIYTFFFVWFVGGLTVFHTYLISRNQSTYENAKYPCDPRDNPYNRGIINNFKEIFCTRIPPSKNNFRSKVPRESLDLYQRTGIGPLRPMMRTTGNMELVGSSVHNDPHEGESDYRDEFGSEAPSKESSLHNPLLEIILEPMNQMRSYNEPNEEESGYRDGFDNEAPSKESSLAKHPLLPMTLEEPMNQTRSYNKPSEVESGYRKGFDNEAPGKESSLDKHPRWGITPEEPMNQMRNCIEPNEEESGYRDGFDNEAPNKSSVSRQSLWKITQEKPMNQMTSCNEPNKEESGYRVGFDNEAPSKESSLGRHPLWEITPEEPMNQTRSFKEPNREESGLRDGFDNEAPSKESSLDRHSLGKITPEEPMNQTRTYNESNEKESDYRDEFDNEAQSKESSLSRHPL 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2986 648 Pfam DHHC palmitoyltransferase 155 281 IPR001594 GO:0016409
Ssu5g2986 648 MobiDBLite consensus disorder prediction 394 422 - -
Ssu5g2986 648 MobiDBLite consensus disorder prediction 502 533 - -
Ssu5g2986 648 ProSiteProfiles DHHC domain profile. 156 206 - -
Ssu5g2986 648 PANTHER S-ACYLTRANSFERASE 19 351 - -
Ssu5g2986 648 MobiDBLite consensus disorder prediction 351 370 - -
Ssu5g2986 648 MobiDBLite consensus disorder prediction 620 648 - -
Ssu5g2986 648 MobiDBLite consensus disorder prediction 489 648 - -
Ssu5g2986 648 MobiDBLite consensus disorder prediction 571 606 - -
Ssu5g2986 648 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 19 351 - -
Ssu5g2986 648 MobiDBLite consensus disorder prediction 434 476 - -
Ssu5g2986 648 MobiDBLite consensus disorder prediction 447 472 - -
Ssu5g2986 648 MobiDBLite consensus disorder prediction 348 377 - -
Ssu5g2986 648 MobiDBLite consensus disorder prediction 398 416 - -
Ssu5g2986 648 MobiDBLite consensus disorder prediction 112 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2986 Ssu-Chr5 76844371 76849538 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2986 88 302 Lipid Metabolism Gene Families AT4G22750 29.741 1.78e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2986 - - gmx:100788304 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2414 1 67403816 67408713 Ssu5g2986 5 76844371 76849538 ECH
Ssu5g2986 5 76844371 76849538 Ssu5g2986 5 76844371 76849538 ECH