Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2414 ATGTTTGCAGTGCAGCCTCCGGCGCCGGCGAACTCCGACGGCGACGCTGCCGGAGATACTGTTGGTCCTTCTCTGGTCAGAACATACCGTGCTTGGAAAGGCAATAACGAATTTTGTCTTCGAGGAATGCTTATATTTGGACCTGATGTGAAATCTATATTTCTGACGGTCTTTCTTATCGTGGCCCCTGTTGCTGTTTTCTCTGCTTTTGTGGCGAGGAAATTGTTGGATGATTCTCCTCATCACTGGGGATATTCAATATTGATCGTACTTATTGTTCACACATTGTTTGTTCTGATCACCCTTCTACTGACCTCAGGAAGAGATCCTGGCATAGTGCCCCGTAATGCTTATCCTCCAGTGTTAGATGAATATGATGGGAGTGCCAATATCAACAATGAACAGACCCCACGGCTACATTTGCCACGAGCAAAGGAAGTAATTGTCAATGGAGTATCTGTGAAGACAAAATACTGTGACACCTGCATGCTGTATAGACCTCCCCGCTGTTCTCATTGTTCAGTATGTGATAACTGCGTGGAGCGATTTGATCATCACTGCCCATGGGTGGGTCAGTGCATTGGATTGCGAAATTACAGGTTCTACTACATGTTTGTTTTCTCTTCAACCCTTCTTTGTTTATATGTTCATGGCTTTTGCTGGGTCTACATTAAGAGGATCATGGATTCAGAGGATATATCAATTTGGAAAGCAATGATCAAAACTCCTGCTTCCATTGCATTAATAATATACTCCTTCATTTCCATCTGGTTTGTTGGTGGCCTCACTGTTTTCCACACATATCTAATCAGCAAAAACCAGTCCACTTATGAAAATTTTAGATACCGGTATGACCAACAAGTCAACCCTTATGACAACGGAGTAGCTGAGAACTTCAAAGAAATATTCTGCTCTGTCATTCCTCCATCCAAGAACAAATTCAGGTCTAAGATTCCAATTCCAAAGGAACCATCAGATTCATCTGGAAGAAGGACTGTTGAATCCCTGAGCCCTATGATGAGAAAAACAGCAGGAGACCTTGAATTAGGGACCCCAGTGTACAATGAAGTTGAGGAAGAGGAGGAAAGTGATTATGTAGATGAGTTTACCAATGATGAGGAACATGGCAAGGGTAGTGGAATAGGTGACATGTCCATGAGTTTGACAAGGATGCTTCACACTGAAGGGGGGCAGAGACAGGTTGCTTCGTTTCTAAGGCACTCATCGTGGGAAAGCAGCATCAAAGAAAATGGGACATAA 1260 0.4341 MFAVQPPAPANSDGDAAGDTVGPSLVRTYRAWKGNNEFCLRGMLIFGPDVKSIFLTVFLIVAPVAVFSAFVARKLLDDSPHHWGYSILIVLIVHTLFVLITLLLTSGRDPGIVPRNAYPPVLDEYDGSANINNEQTPRLHLPRAKEVIVNGVSVKTKYCDTCMLYRPPRCSHCSVCDNCVERFDHHCPWVGQCIGLRNYRFYYMFVFSSTLLCLYVHGFCWVYIKRIMDSEDISIWKAMIKTPASIALIIYSFISIWFVGGLTVFHTYLISKNQSTYENFRYRYDQQVNPYDNGVAENFKEIFCSVIPPSKNKFRSKIPIPKEPSDSSGRRTVESLSPMMRKTAGDLELGTPVYNEVEEEEESDYVDEFTNDEEHGKGSGIGDMSMSLTRMLHTEGGQRQVASFLRHSSWESSIKENGT 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2414 419 Pfam DHHC palmitoyltransferase 155 281 IPR001594 GO:0016409
Ssu1g2414 419 PANTHER S-ACYLTRANSFERASE 19 415 - -
Ssu1g2414 419 MobiDBLite consensus disorder prediction 362 384 - -
Ssu1g2414 419 ProSiteProfiles DHHC domain profile. 157 207 - -
Ssu1g2414 419 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 19 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2414 Ssu-Chr1 67403816 67408713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2414 86 319 Lipid Metabolism Gene Families AT4G22750 27.559 7.18e-19 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2414 - - gmx:100791866 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2414 1 67403816 67408713 Ssu5g2986 5 76844371 76849538 ECH
Ssu1g2414 1 67403816 67408713 Ssu1g2414 1 67403816 67408713 ECH