Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2959 ATGGGACTCGAACCGAACGAAAAAAGCAAGCGAACGGAGCACGGACAAAACGGCGTCGTCAATGGCAGGGAAGAACACGAAGAAGCATTGGTGGCTCTCGTCGAACACCGTACCCGTGAAGTCAAAAACCTCCGTTACTACATCTCTTATTACACCATCCAGCTTGAGGAAGCAGAAAGGAGATTGCAAGAATCTAAATCCAAATTGGCTCTCCTTCGAGGTCAAACCAGTGCAAGATCATCAGAGGTTGAAACTAAACATGTGAAGACAGATCATGGATCAAAAAATGCTCTCAGTCATAAAAGTGAACCTTCTTCCAAAAATCACCATCAATCTAATCCACACCTTCTTGTTCCTGTTGTGAGTTCAAAAATCTCGCAGTCTATACCATTGCCGCCTTCTCCTCCTCATACAAGTGTAACAAAATCTTCAGCTGTTGGTTTAATGATCGGTTCAACAGTGAAGTCTGCTAAGTCTCACGGAGTTTATAATGAGCAGGAAGATATTGAAATCAAGGAGAGAGGGAACAAAAGGAAGTTTGGACAGGAGGAACATGAAGAATTGATTGCTTTAATATGTAAGAGTTCTTCGCCAAGATCAGTTGATTATCAAATGAGCAGCCACTTCTCAAGTCAACACAAGAGGAGAGTGCGATGTATTGCTTTGTGTCCTGTGAATGACCAGCGTTTTGCGACTAgTGCTTTGGATGGTGTGGTCAACTTGTGGGAAGTTCATTCTTCAGGATCAGGAGTTTCTTTGCTTAGAACTACTGATTGTATATCCCCAAAGCAGAGGAGATGGCCAGAAGATATAGCTTGGCATCCAGGAGGAAACAGACTGTTTTCAGTACATAGTGCTGATGGTCAAGACTCTCAAATATCAGTTACAGATTTGAGTGGAGTGCAAGGGGGAGGGAGAGCACATGTCAATTTCTTAGAGGACAAGCCTCATGTTAAGGGTGTTATAAATAGCATTGTTTTCCTGCCTTGGGAAAATACCAGTTTTGTAACTGGGGGAACTGACCATGCTGTTATAATGTGGAATGAGAATGGTGAGAACAAATGGAAGCCAACACTATTACATAGGAATAGTCATTCTTCTGCTGTCATGGGAGTAGCTGGTATGCACCAGAAGCAAATTGTATTGTCTGCCGGTAAAGACAAGAGAATTTTGGGGTATGATGTTGATGTAGGAATACCAGATTTCGTGCATCAAGTTGATAGTAAATGTTTGAGTGTCCTGCCAAATCCATGTGACTTCAATTTATTCATGGTTCAAACAGGgACCCATGAGAGGCAGCTTCGATTATTTGATATTAGATCAAAAGGGATAGAACTTCATGTCTTTGGATGGAAGCAAGAAAGCAGTGATTCTCAGTCAGCTCTGATCAATCAGGCTTGGTCCCCGAGTGGACTGTATATAACATCTGGTTCAGCTGACCCCACAATTCACATATTTGATATCAGATATAATGGTCACAAGCCTTCCCAATCTATAGAAGCTCATCAGAAACGAGTCTTCAGAGCCATGTGGCTTCATTCTGTTCCCTTTCTAGTTTCCATATCATCTGATCTCAACATTGGGTTACACAAGGTTGTGTAG 1602 0.4213 MGLEPNEKSKRTEHGQNGVVNGREEHEEALVALVEHRTREVKNLRYYISYYTIQLEEAERRLQESKSKLALLRGQTSARSSEVETKHVKTDHGSKNALSHKSEPSSKNHHQSNPHLLVPVVSSKISQSIPLPPSPPHTSVTKSSAVGLMIGSTVKSAKSHGVYNEQEDIEIKERGNKRKFGQEEHEELIALICKSSSPRSVDYQMSSHFSSQHKRRVRCIALCPVNDQRFATSALDGVVNLWEVHSSGSGVSLLRTTDCISPKQRRWPEDIAWHPGGNRLFSVHSADGQDSQISVTDLSGVQGGGRAHVNFLEDKPHVKGVINSIVFLPWENTSFVTGGTDHAVIMWNENGENKWKPTLLHRNSHSSAVMGVAGMHQKQIVLSAGKDKRILGYDVDVGIPDFVHQVDSKCLSVLPNPCDFNLFMVQTGTHERQLRLFDIRSKGIELHVFGWKQESSDSQSALINQAWSPSGLYITSGSADPTIHIFDIRYNGHKPSQSIEAHQKRVFRAMWLHSVPFLVSISSDLNIGLHKVV 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2959 533 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 11 532 - -
Ssu5g2959 533 MobiDBLite consensus disorder prediction 80 108 - -
Ssu5g2959 533 Coils Coil 48 75 - -
Ssu5g2959 533 ProSiteProfiles Trp-Asp (WD) repeats profile. 210 252 IPR001680 GO:0005515
Ssu5g2959 533 SUPERFAMILY WD40 repeat-like 211 529 IPR036322 GO:0005515
Ssu5g2959 533 Gene3D - 356 532 IPR015943 GO:0005515
Ssu5g2959 533 MobiDBLite consensus disorder prediction 71 113 - -
Ssu5g2959 533 Gene3D - 189 355 IPR015943 GO:0005515
Ssu5g2959 533 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 11 532 - -
Ssu5g2959 533 MobiDBLite consensus disorder prediction 1 23 - -
Ssu5g2959 533 Pfam WD domain, G-beta repeat 464 487 IPR001680 GO:0005515
Ssu5g2959 533 SMART WD40_4 492 531 IPR001680 GO:0005515
Ssu5g2959 533 SMART WD40_4 204 243 IPR001680 GO:0005515
Ssu5g2959 533 SMART WD40_4 356 394 IPR001680 GO:0005515
Ssu5g2959 533 SMART WD40_4 450 487 IPR001680 GO:0005515
Ssu5g2959 533 SMART WD40_4 308 348 IPR001680 GO:0005515
Ssu5g2959 533 SMART WD40_4 256 297 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2959 Ssu-Chr5 76369109 76373552 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2959 - - ccaj:109813667 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2959 5 76369109 76373552 Ssu5g2959 5 76369109 76373552 ECH
Ssu5g2959 5 76369109 76373552 Ssu1g2442 1 67971605 67977549 PCT