Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2442 ATGGAGCCAAACGAGGAGAACGGAGGCAGCACGAGCAGGGAGGAACAGGAGGAGGCATTGGTGGCTTTGATCGAACACCGAACCCGCGAAGTCAAAAACCTCCGTCACCGCATCGCGTATTACAAAACCCAGCTTGACGAAGCAGAGAAAAGGTTGCAAGATTCTGAATCCAAATTGGCTCGTCTTCGAGGTCAAACTAATGCAGTGTTATCTAAAAGTACCTTAGATGATGGAATCAAAACTGTGAAGACAGAGCGCAGATCAACCAGTCCCATTGATAGAAATGAAGGCTCTACCAAAAACCAACATCAATCTAAAACAGAACTCGTTATTCCTTCAGTGAATCCAAAAATTTCACAACCTGTACTGTTGCCAAAGTCTTCTGCAAAAGCTTCAATAACTTCCAGTTCTGAAGCCACTCCTGGAGTCCATAATTCTCCAATCACAGGTGGTAGCTCTAGGGGAAAATCTGACAAGTCTCATGGTCATAGACTTTCTTCTGAGCATCAAAAATCTGAAATCAAGGATAAAGGGACAAAAAGGAAATTTGAACAAAAAGAACACAAGGAATTGATTCCTTTAATACGCAAGAGTTCTTCACCAAGCTTGGTACACTGTCAAACTAGCAATCACATCTCAAGTCAACACAAGAGGAAATTGCGGAGTATTGCTTTGTGTCCTGTGAATGATCAGCTTTTTGTGACCAGTGCTCTGGATGGAGTGGTCAATTTCTGGCAAGTTCAGGCTAAGGGAGCAGGAGCCTCTCGTCTTAGCACTACTGATTGTGCATCGCAAAAGCAGAGGAGATGGCCAGAAGATTTAGCTTGGCACCCAGAAGGAAACAGCCTATTTTCAGTATACAGTGCTGATAGTGGAGACTCTCAAGTATCGATTACAAATCTAAATAAAGGACAAGGGGGAGAACGTGTAAAATTCTTAGAGGACAAGCCTCATGTTAAGGGAATTATCAATGGCATTGTTTTTATGCCCTGGGAAAATACATGTTTTGTAACTGGTGGAAGTGACCATGCTGTTATACTTTGGAGTGAGCAGGATGGTGAGAACAAGTGGAAGCCAAAGGCATTGCACAGGAATCTTCACTCTTCTGCTGTCATGGGAGTTGCTGGTATGCAGCAGAAGCAGATTGTGTTGTCTGTTGGTGCAGACAGGAGAATATTTGGGTATGATGTTCGTGTAGGAAGAGCAGATTTCAAGCATCAGGTTGATAGTAAATGCATGAGTGTCCTGCCCAATCCGTGCGACTTCAATTTATTCATGGTTCAAACAGGGACCCATGAGAGGCAGCTTCGGTTGTTTGATATTAGATTGAGGAATACAGAACTTCATGCTTTTGGGTGGAAGCAAGAAAGCAGTGATTCTCAATCAGCTCTGATAAATCAGGCTTGGTCTCCTGATGGACTTTATATAACATCTGGTTCTGCGGATCCTGTGATTCACATATTTGACATAAGGTATACTGCTCACAAGCCTTCCCAATCTATAAGAGCGCATCAGAAACGAGTCTTCAGAGCCTTGTGGCTTCAGTCCATTCCTCTTGTCATTTCCATATCATCTGATCTCAACATTGGATTGCACAAGGTTCACTAG 1608 0.4328 MEPNEENGGSTSREEQEEALVALIEHRTREVKNLRHRIAYYKTQLDEAEKRLQDSESKLARLRGQTNAVLSKSTLDDGIKTVKTERRSTSPIDRNEGSTKNQHQSKTELVIPSVNPKISQPVLLPKSSAKASITSSSEATPGVHNSPITGGSSRGKSDKSHGHRLSSEHQKSEIKDKGTKRKFEQKEHKELIPLIRKSSSPSLVHCQTSNHISSQHKRKLRSIALCPVNDQLFVTSALDGVVNFWQVQAKGAGASRLSTTDCASQKQRRWPEDLAWHPEGNSLFSVYSADSGDSQVSITNLNKGQGGERVKFLEDKPHVKGIINGIVFMPWENTCFVTGGSDHAVILWSEQDGENKWKPKALHRNLHSSAVMGVAGMQQKQIVLSVGADRRIFGYDVRVGRADFKHQVDSKCMSVLPNPCDFNLFMVQTGTHERQLRLFDIRLRNTELHAFGWKQESSDSQSALINQAWSPDGLYITSGSADPVIHIFDIRYTAHKPSQSIRAHQKRVFRALWLQSIPLVISISSDLNIGLHKVH 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2442 535 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 5 534 - -
Ssu1g2442 535 Coils Coil 31 65 - -
Ssu1g2442 535 SMART WD40_4 452 489 IPR001680 GO:0005515
Ssu1g2442 535 SMART WD40_4 200 246 IPR001680 GO:0005515
Ssu1g2442 535 SMART WD40_4 306 349 IPR001680 GO:0005515
Ssu1g2442 535 SMART WD40_4 356 396 IPR001680 GO:0005515
Ssu1g2442 535 SMART WD40_4 494 533 IPR001680 GO:0005515
Ssu1g2442 535 MobiDBLite consensus disorder prediction 79 93 - -
Ssu1g2442 535 MobiDBLite consensus disorder prediction 156 187 - -
Ssu1g2442 535 Gene3D - 410 535 IPR015943 GO:0005515
Ssu1g2442 535 SUPERFAMILY WD40 repeat-like 218 531 IPR036322 GO:0005515
Ssu1g2442 535 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 5 534 - -
Ssu1g2442 535 MobiDBLite consensus disorder prediction 79 187 - -
Ssu1g2442 535 Gene3D - 79 409 IPR015943 GO:0005515
Ssu1g2442 535 MobiDBLite consensus disorder prediction 94 155 - -
Ssu1g2442 535 Pfam WD domain, G-beta repeat 466 489 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2442 Ssu-Chr1 67971605 67977549 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2442 - - gmx:100799587 1003.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2442 1 67971605 67977549 Ssu1g2442 1 67971605 67977549 ECH
Ssu5g2959 5 76369109 76373552 Ssu1g2442 1 67971605 67977549 PCT