Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2958 ATGGGCAACTGCTGCTCCGACGTCGCCGGCGGCCAAACGGCCATCGGCGGCACCGCTGGCGGCCACCTTAATCCGGCCAACGCTTCCAACGACGCCGTCGATCTCTTCCTCAGGTCCCGCGGCTACCACGGCCTCTTCTCTCAGATCGAGTTGTCGTTTTCTGCTTCTGGATTGCGTGATCGGGATGTGCTCTCCAAGAGTGATCCAATGATGGTTCTTTATACAAGAGGAAATAATGGAGCACTTGAGGAACTTTGCCGGACAGAAGTAATTCTGAATTCATTAAATCCTAAATGGATTACTAAAGACACTCTCATTTATCATTTTGAGGTTGTTCAGGTTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAATGTAGATGTAAAGATGCTTAAGCTAGAAGAGCAGCAGTATCTAGGTGAGGCAACCTGTGCATTGTCTGAGATAATTACAAAGTTTGATCGATCAATGACATTAGATTTACACACAGAAGGTTCTATCAGATCTACCCAGTCCCAAAACTGTGGAAAGCTCTTGGTGCATGCTGAGGAATGTGTTAGCTCAAAGACCACAATAGAGATGATACTCAGGTGTTCAGATTTGGAATATAGGGATTTATTCTCAAGAAGTGATCCCTTCTTATTGGTATCAAAAGTTGTGGAAGGTGGTAGCCATATTCCAATTTGCAAAACAGAAGTTATAAAGAATGATCACAACCCAATATGGAAGCCAGTGTTCTTGAATATTCAACAAGTAGGAAGCAAGGAAAGTCCTTTGATAATAGAGTGCTATAACTTTAATAGCAATGGCAAACATGATTTGATGGGAAAAATGCAGAAATCTTTGGTGGAGTTGGAGAAGCTTTATTCTGGTGGCCAAGGAGAACATTTTTTTTCGTCCGCTGCTGCGGGTCATAATTCCCAAAACAAgGTGTTAAAGAGTCGGTTATTTGTGGACAAATTTGCTGAAAGTGTCCAATATACTTTCCTGGATTACTTGGCTGGGggatttgaattgaatttcatGGTGGCCATTGATTTTACAGCTTCAAATGGAAATCCACGCCTTCCAGATTCTTTGCATTATATTGATCCTTCTGGACGGCCAAATGCATACCAGAGGGCAATTTTAGAGGTTGGGGAGGTGTTACAGTATTATGATTCAGACAAACGATTTCCTACATGGGGATTTGGAGCACGACCAATTGATGGTCCTGTCTCCCATTGTTTCAACTTGAACGGAAGCAGCCATTACTGTGAGGTGGAAGGCATCCAAGGAATTATGATGGCATACACAAGTGCCCTGCTTAATGTTTCGCTTGCAGGACCAACTCTTTTTGGACCTGTCATAAGCAATGCCGCACTGATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTGTTAATCATCACAGATGGAGTGGTGACAGATCTCCAAGAAACAAAAGACGCTCTTGTTAAAGCATCTGATCTACCATTATCAATCCTCATTGTTGGCGTAGGAGGAGCTGATTTCAAAGAAATGGAGGTTTTGGATGCTGATAAAGGAGAGAGGCTTGAAAGTTCATCTGGTCGCGTTGCTTCGCGTGATATAGTCCAGTTTGTTCCATTTCGTGACGTTCAAAGTGGAGAAATTTCAGTAGTTCAAGCACTTCTAGCTGAATTACCTACTCAATTTTTAACTTACATGCGGAGCAGAAATATCCAACCGAATCCCTAG 1740 0.4236 MGNCCSDVAGGQTAIGGTAGGHLNPANASNDAVDLFLRSRGYHGLFSQIELSFSASGLRDRDVLSKSDPMMVLYTRGNNGALEELCRTEVILNSLNPKWITKDTLIYHFEVVQVLVFRVYDVDTQFHNVDVKMLKLEEQQYLGEATCALSEIITKFDRSMTLDLHTEGSIRSTQSQNCGKLLVHAEECVSSKTTIEMILRCSDLEYRDLFSRSDPFLLVSKVVEGGSHIPICKTEVIKNDHNPIWKPVFLNIQQVGSKESPLIIECYNFNSNGKHDLMGKMQKSLVELEKLYSGGQGEHFFSSAAAGHNSQNKVLKSRLFVDKFAESVQYTFLDYLAGGFELNFMVAIDFTASNGNPRLPDSLHYIDPSGRPNAYQRAILEVGEVLQYYDSDKRFPTWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMMAYTSALLNVSLAGPTLFGPVISNAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEVLDADKGERLESSSGRVASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLTYMRSRNIQPNP 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2958 579 Gene3D C2 domain 194 313 IPR035892 -
Ssu5g2958 579 SUPERFAMILY vWA-like 342 524 IPR036465 -
Ssu5g2958 579 Pfam C2 domain 54 154 IPR000008 -
Ssu5g2958 579 Pfam C2 domain 198 301 IPR000008 -
Ssu5g2958 579 CDD C2A_Copine 47 166 - -
Ssu5g2958 579 Gene3D C2 domain 52 193 IPR035892 -
Ssu5g2958 579 CDD vWA_copine_like 311 566 IPR010734 -
Ssu5g2958 579 SMART C2_3c 198 300 IPR000008 -
Ssu5g2958 579 SMART C2_3c 48 161 IPR000008 -
Ssu5g2958 579 SMART VWA_4 341 538 IPR002035 -
Ssu5g2958 579 ProSiteProfiles C2 domain profile. 29 164 IPR000008 -
Ssu5g2958 579 ProSiteProfiles C2 domain profile. 177 301 IPR000008 -
Ssu5g2958 579 Pfam Copine 362 577 IPR010734 -
Ssu5g2958 579 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 577 - -
Ssu5g2958 579 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 176 288 IPR035892 -
Ssu5g2958 579 ProSiteProfiles VWFA domain profile. 343 562 IPR002035 -
Ssu5g2958 579 PANTHER COPINE 1 577 IPR045052 GO:0005544
Ssu5g2958 579 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 54 169 IPR035892 -
Ssu5g2958 579 CDD C2B_Copine 195 290 IPR037768 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2958 Ssu-Chr5 76347259 76354973 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2958 - - gmx:100807801 1078.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2958 5 76347259 76354973 Ssu5g2958 5 76347259 76354973 ECH
Ssu5g2958 5 76347259 76354973 Ssu1g2443 1 67998459 68008458 PCT