Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2443 ATGGGAAACTGCTTCTCCGAAGTCGCCGCAGGCCGCGCCGCCATCGGCGGCACAGCCGGCGATTTCCGGAATCCGGCGGGCGGTCCCAACGACGCCGTCGAGAACTTCCTCAGGTCTCGCGGCCACCACGGCCTCTTCTCTCAGATCGAGTTGTCGTTTTCCGCTTCTGGCTTGCGTGATCGTGATGTGCTCTTCAAGAGTAATCCGATGATGGTTCTTTATGCAAGAGGAAAAAATGGAGCACTTGAGGAACTTCGCCGCACGGAAGTAGTTTTGAATTCATCAAGTCCCACATGGATTACTAAACACACCCTCATTTATCATTTTGAGGTTGTTCAGGTTTTAGTGTTTCGTGTATATGATGTTGATACTCAGTTTCGCAATGTAGATGTAAAGATGCTTGAGCTAGAAGAGCAGCAATTTCTTGGTGAGGCGACCTGTGTACTATCTCAGATAATCACACAACCTGATCAATTATTGACTATAGATCTACACACAGAAGATTCTATCAGATCTACCCTTTCTAAAAACTGTGGGAAACTCTTGGTGCATGCTGAGGAATGTGTTAGCTCAAAGACTGCAATAGAGATGGTGTTCAGGTGTTCAGATTTGGAATACAAGGATCTATTCTCAAGAAATGACCCCTTTTTATTGATATCAAAAGTTGCGGAAGGTGGTGCCCAAATTCCAATTTGCAAAACAGAAGTTATAAAGAATGATCTCAACCCAATATGGAAGTCAGTGTTTGTGAATATCCAACAAGTAGGAAGCAagGACAGTCCTTTGATAATAGAGTGCTATAACTTTAATAGCAATGGCAAACATGATTTAATGGGAAAAGTTCAGAGATCTTTGGCAGAGTTGGAGAATATTCATAATAATGGCCAaggagaaaatttattttttccttctgcTGGTGGAGAAAATCATGATAACAAGGTGCTAAAGAGCCAACTATTTGTGGAAAAATTTACTGAAAGTGTCCAACATACTTTCTTGGATTACTTGGTGGGGGGATTTGAATTGAACTTCATGGTGGCTGTTGACTTTACAGCTTCAAATGGAAATCCCCGCCTTCCGGATTCTTTGCATTATATTGATCCTTCAGGACGGCCAAATGCATACCAGAGGGCAATTGTTGAGGTTGGGGAAGTGTTACAGTTTTATGATTCAGACAAACGATTTCCCACTTGGGGATTTGGGGCACGACCAATTGATGGTCCTGTTTCCCATTGTTTCAACTTGAATGGAAGTAGTCATTACTGTGAGGTGGAAGGGATCCAAGGAATTATGATGGCTTACACAAGTGCCCTGCATAATGTATCTCTGGCAGGACCTACTCTTTTTGGACCTGTCATAAGCACTGCTGCACTGATTGCCAGCCAATCTGTAGCAAATGGCGGAAGAAAgtactttgttttattaataatcaCAGATGGAGTAGTGACAGATCTCCAGGAAACAAAAGATGCTATTGTTAAAGCATCTGACCTGCCATTATCAATCCTTATTGTTGGGGTAGGAGGAGCGGATTTCAAAGAAATGGAGGTTCTGGATGCAGACAAGGGAGAGAGGCTTGAAAGTTCATATGGACGCGTTGCTTCACGTGATATAGTTCAATTTGTTCCATTTCGGGAGGTTCAAAGTAAGTATCATTAA 1659 0.4195 MGNCFSEVAAGRAAIGGTAGDFRNPAGGPNDAVENFLRSRGHHGLFSQIELSFSASGLRDRDVLFKSNPMMVLYARGKNGALEELRRTEVVLNSSSPTWITKHTLIYHFEVVQVLVFRVYDVDTQFRNVDVKMLELEEQQFLGEATCVLSQIITQPDQLLTIDLHTEDSIRSTLSKNCGKLLVHAEECVSSKTAIEMVFRCSDLEYKDLFSRNDPFLLISKVAEGGAQIPICKTEVIKNDLNPIWKSVFVNIQQVGSKDSPLIIECYNFNSNGKHDLMGKVQRSLAELENIHNNGQGENLFFPSAGGENHDNKVLKSQLFVEKFTESVQHTFLDYLVGGFELNFMVAVDFTASNGNPRLPDSLHYIDPSGRPNAYQRAIVEVGEVLQFYDSDKRFPTWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMMAYTSALHNVSLAGPTLFGPVISTAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDAIVKASDLPLSILIVGVGGADFKEMEVLDADKGERLESSYGRVASRDIVQFVPFREVQSKYH 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2443 552 PANTHER COPINE 1 549 IPR045052 GO:0005544
Ssu1g2443 552 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 166 IPR035892 -
Ssu1g2443 552 Pfam Copine 362 549 IPR010734 -
Ssu1g2443 552 CDD C2A_Copine 47 166 - -
Ssu1g2443 552 ProSiteProfiles C2 domain profile. 28 162 IPR000008 -
Ssu1g2443 552 SMART C2_3c 198 297 IPR000008 -
Ssu1g2443 552 SMART C2_3c 48 161 IPR000008 -
Ssu1g2443 552 Pfam C2 domain 54 155 IPR000008 -
Ssu1g2443 552 Pfam C2 domain 198 292 IPR000008 -
Ssu1g2443 552 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 176 288 IPR035892 -
Ssu1g2443 552 CDD C2B_Copine 195 288 IPR037768 -
Ssu1g2443 552 ProSiteProfiles C2 domain profile. 177 301 IPR000008 -
Ssu1g2443 552 CDD vWA_copine_like 312 550 IPR010734 -
Ssu1g2443 552 SUPERFAMILY vWA-like 342 524 IPR036465 -
Ssu1g2443 552 SMART VWA_4 341 538 IPR002035 -
Ssu1g2443 552 Gene3D C2 domain 194 304 IPR035892 -
Ssu1g2443 552 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 549 - -
Ssu1g2443 552 Gene3D C2 domain 52 193 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2443 Ssu-Chr1 67998459 68008458 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2443 - - gmx:100799074 1035.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2443 1 67998459 68008458 Ssu1g2443 1 67998459 68008458 ECH
Ssu5g2958 5 76347259 76354973 Ssu1g2443 1 67998459 68008458 PCT