Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2955 ATGGAAGCAGTGAACGTGAGGGCTAGAGAAGGAGCAATAGCGCGAGTGGGTCTAGATGATGGCGTAGCAATAGACAGCACTCAGACTGAACTCACCAAAATCCGTCTTCTGAGGACCATTGTTGAAACACGTGATCCATCTTCTAAGGAAGAGGATGATTTCATGATTAGAAGATTCCTGCGTGCTCGTGATTTAGATGTGGAGAAGGCTTCGGCAATGTTGCTCAAGTACTTGACATGGAGACATTCATTTGTTCCAAATGGTTCTATATCTCTGTCAGAAATTCCTAACGAACTTGCACAGGATAAGGTGTTCGTGCAAGGACGCGACAAGATAGGTCGACCTATATTTGTTGTCTTCGGCGGAAAACATTTTCAGAACAAAGATAGTCTCGATGAATTCAAACGGTTTGTTGTCTATGTTCTTGATAAAGTATGTGCAAGTATGCCACCCGGGCAAGAAAAGTTTGTTGGTATAGCAGAACTAAAGGGATGGGGATACTCAAACAGTGACGTGCGTGGATACGTTAGTGCTCTAAGCATTTTGCAGGATTACTACCCCGAAAGATTGGGGAAATTGTTTATTGTCAATGCACCATACATTTTTATGAAAGCGTGGCAAATTGTTTACCCGTTCATTGACAACAAAACCAAGAAGAAGATAGTATTTGTGGAGAAAAATAAGGTGAAATCAACATTACTAGAAGATATAGACGAAAGTCAGCTCCCAGATATATTTGGTGGCCCACTGCCATTAGTTCCAATTCAGGATAGCTAA 777 0.417 MEAVNVRAREGAIARVGLDDGVAIDSTQTELTKIRLLRTIVETRDPSSKEEDDFMIRRFLRARDLDVEKASAMLLKYLTWRHSFVPNGSISLSEIPNELAQDKVFVQGRDKIGRPIFVVFGGKHFQNKDSLDEFKRFVVYVLDKVCASMPPGQEKFVGIAELKGWGYSNSDVRGYVSALSILQDYYPERLGKLFIVNAPYIFMKAWQIVYPFIDNKTKKKIVFVEKNKVKSTLLEDIDESQLPDIFGGPLPLVPIQDS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2955 258 PANTHER OS03G0850700 PROTEIN 25 258 - -
Ssu5g2955 258 SUPERFAMILY CRAL/TRIO domain 95 251 IPR036865 -
Ssu5g2955 258 Pfam CRAL/TRIO, N-terminal domain 50 75 IPR011074 -
Ssu5g2955 258 CDD SEC14 104 248 IPR001251 -
Ssu5g2955 258 Gene3D - 23 256 IPR036865 -
Ssu5g2955 258 SUPERFAMILY CRAL/TRIO N-terminal domain 27 87 IPR036273 -
Ssu5g2955 258 SMART CRAL_TRIO_N_2 52 77 IPR011074 -
Ssu5g2955 258 Pfam CRAL/TRIO domain 103 248 IPR001251 -
Ssu5g2955 258 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 92 254 IPR001251 -
Ssu5g2955 258 PANTHER POLYPHOSPHOINOSITIDE-BINDING PROTEIN 25 258 - -
Ssu5g2955 258 SMART sec14_4 98 251 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2955 Ssu-Chr5 76274524 76293205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2955 58 243 Acyl Lipid Metabolism Gene Families AT5G47730 29.000 5.54e-16 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2955 - - gmx:548015 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2446 1 68103099 68105178 Ssu5g2955 5 76274524 76293205 ECH
Ssu5g2955 5 76274524 76293205 Ssu5g2955 5 76274524 76293205 ECH
Ssu5g2955 5 76274524 76293205 Ssu1g2446 1 68103099 68105178 PCT