Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2446 ATGGAGGGTGTGAGCCCTGAGCCCCAGAGATCACCATTGGATTCCAATTCCAAACGAGAAGAAGCAAGACCGCAAGATGACGGCGCAATGAAAGACAGCACTGACGCCGAGCTCACCAAAATTAGTCTCATGAGAGCCTTTGTTGAAAGCCGAGATCCCTCTTCTGAGGAAGTAGATGATTTAATGATTAGAAGATTCTTGCGCGCTCGTAGTTTAGATGTGGAGAAGGCTTCAGCGATGTTCCTTAAGTACATGAAATGGAAACGTTCATTTGTTCCAAATGGTTATATATCCCCGTCAGAGATTGCCGAAGATATTGCACAGGGCAAGATGTACGTGCAAGGGATCGACAAGAAGGGTCGACCTATAACTGTTGCCTTTGCTGCAAAACatttgcaaaacaaaaataggGGGGATGGATTCAAACGGTATGTAGTCTTTGCTCTTGAGAAGCTATGTTCAAGGATGCCACCGGGGCAAGAAAAGTTTCTTGCCATTGCAGACATTAAAGGTTGGGGATACGCAAACAGTGACATTCGTGGATACATGAATGCTTTATCCATTTTGCAGGATTGCTACCCTGAAAGATTGGGGAAGTTGTTTATTGTGCACGCACCTTTTATGTTTATGACAGTTTGGAAAATTATTTACCCATTCATTGACGACAATACCAAGAAAAAGATAGTATTCGTGGAGAACAAAAAGCTGAAATCTACATTGCTAGAAGAGATAGACGAGAGTCAACTCCCAGATATATACGGGGGCCAAATGCCATTAGTCCCTATCCAGGATTGctga 798 0.4248 MEGVSPEPQRSPLDSNSKREEARPQDDGAMKDSTDAELTKISLMRAFVESRDPSSEEVDDLMIRRFLRARSLDVEKASAMFLKYMKWKRSFVPNGYISPSEIAEDIAQGKMYVQGIDKKGRPITVAFAAKHLQNKNRGDGFKRYVVFALEKLCSRMPPGQEKFLAIADIKGWGYANSDIRGYMNALSILQDCYPERLGKLFIVHAPFMFMTVWKIIYPFIDDNTKKKIVFVENKKLKSTLLEEIDESQLPDIYGGQMPLVPIQDC 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2446 265 MobiDBLite consensus disorder prediction 1 35 - -
Ssu1g2446 265 CDD SEC14 112 256 IPR001251 -
Ssu1g2446 265 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 99 261 IPR001251 -
Ssu1g2446 265 SUPERFAMILY CRAL/TRIO domain 100 258 IPR036865 -
Ssu1g2446 265 SMART sec14_4 105 258 IPR001251 -
Ssu1g2446 265 SMART CRAL_TRIO_N_2 59 84 IPR011074 -
Ssu1g2446 265 Pfam CRAL/TRIO domain 108 255 IPR001251 -
Ssu1g2446 265 MobiDBLite consensus disorder prediction 13 34 - -
Ssu1g2446 265 PANTHER POLYPHOSPHOINOSITIDE-BINDING PROTEIN 18 265 - -
Ssu1g2446 265 PANTHER OS03G0850700 PROTEIN 18 265 - -
Ssu1g2446 265 SUPERFAMILY CRAL/TRIO N-terminal domain 30 96 IPR036273 -
Ssu1g2446 265 Gene3D - 7 263 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2446 Ssu-Chr1 68103099 68105178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2446 65 250 Acyl Lipid Metabolism Gene Families AT1G55840 24.880 4.23e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2446 - - gmx:100797666 463.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2446 1 68103099 68105178 Ssu5g2955 5 76274524 76293205 ECH
Ssu1g2446 1 68103099 68105178 Ssu1g2446 1 68103099 68105178 ECH
Ssu5g2955 5 76274524 76293205 Ssu1g2446 1 68103099 68105178 PCT