Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2954 ATGGGCATGTGGAAATGGGGTATTTTGGTGCTTCTCTGTGCTGATTTTCTCTTTGCAATTGGTGCTGTGGAGCTGGGCAGGAATCAACCCACTGAAAGAatttcagGTAGTGCTGGTGATGTATTGGAAGATGATCCAGTGGGAAGGTTGAAGGTTTTTATTTATGAACTTccaagtaaatataataagaaaattctGCAAAAGGACCCAAGATGCCTCAACCATATGTTTGCTGCTGAAATCTTTATGCACCGGTTTCTCTTATCTAGTCCTGTCCGAACCCTTAATCCTGAAGAAGCTGATTGGTTTTATACCCCTGTATACGCCACTTGTGACTTGACACCAAATGGCCTCCCTTTACCCTTTAAGTCACCGCGAATGATGAGAAGTGCTATGCAGCTTATTTCTTCAAACTGGCCTTACTGGAACCGGACGGAGGGGGCAGATCACTTCTTTGTGGTTCCTCATGACTTTGGGGCATGTTTTCATTACCTGgAAGAGAAGGCAATTGAAAGAGGGATTCTTCCACTGCTACAACGTGCTACCTTGGTTCAAACATTTGGACAGAGGAATCATGTGTGCTTGAAAGAGGGCTCAATTACCATTCCTCCATATGCTCCACCACAGAAAATGCATACTCACCTAATTCCTGATAAGACTCCCAGGTCCATTTTTGTATACTTCCGAGGACTCTTTTATGATGTTGGCAATGACCCTGAAGGTGGTTACTATGCAAGAGGTGCAAGAGCAGCAGTGTGGGAGAACTTTAAGGACAATCCACTATTTGACATCTCCACTGAGCATCCAACCACATACTACGAGGACATGCAACGAGCCGTGTTTTGTCTATGCCCACTTGGATGGGCCCCTTGGAGCCCAAGATTGGTAGAGGCTGTGATATTTGGTTGCATCCCTGTTATTATTGCAGATGACATTGTGCTGCCATTTGCTGATGCAATCCCATGGGAAGAGATAGGGGTGTTTGTTGATGAGGAGGATGTTCCCAAGTTGGATACCATACTGACATCTATCCCACCAGAAGTCATATTAAGGAAACAGAGATTGCTTGCTAACCCTTCCATGAAGCAAGCAATGCTATTCCGACAACCTGCTCAACCCGGAGACGCGTTCCATCAAGTTTTAAATGGACTTGCGCGTAAGTTGCCACATGACAGCACTGTGTTCTTGAAACCAGGGGAGAAGATCTTGAATTGGACTGCAGGCCCTGTGGGTGACCTTAAGCCTTGGTAA 1251 0.4468 MGMWKWGILVLLCADFLFAIGAVELGRNQPTERISGSAGDVLEDDPVGRLKVFIYELPSKYNKKILQKDPRCLNHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPVYATCDLTPNGLPLPFKSPRMMRSAMQLISSNWPYWNRTEGADHFFVVPHDFGACFHYLEEKAIERGILPLLQRATLVQTFGQRNHVCLKEGSITIPPYAPPQKMHTHLIPDKTPRSIFVYFRGLFYDVGNDPEGGYYARGARAAVWENFKDNPLFDISTEHPTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFVDEEDVPKLDTILTSIPPEVILRKQRLLANPSMKQAMLFRQPAQPGDAFHQVLNGLARKLPHDSTVFLKPGEKILNWTAGPVGDLKPW 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2954 416 PANTHER IRX10L-LIKE PROTEIN, PUTATIVE-RELATED 6 410 - -
Ssu5g2954 416 Pfam Exostosin family 49 344 IPR040911 -
Ssu5g2954 416 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 6 410 IPR004263 GO:0006486|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2954 Ssu-Chr5 76258713 76261831 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2954 K20870 - gmx:100812747 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2447 1 68127014 68129849 Ssu5g2954 5 76258713 76261831 ECH
Ssu5g2954 5 76258713 76261831 Ssu5g2954 5 76258713 76261831 ECH
Ssu5g2954 5 76258713 76261831 Ssu1g2486 1 68752648 68755323 PCT
Ssu1g2447 1 68127014 68129849 Ssu5g2954 5 76258713 76261831 PCT