Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2486 ATGAGAGCTTCTATCAAATCTTTCTTTTCGTCCACTTGTTGGCCTTCTCACTTTGTGGCTCTTTTCTTCGTAACTTCACTAGTTCTTGTTTCTTGTTGGAGTTTTCTCGCTCCAAATTTCTCTTCACCTCTTGTTTCTTGGAGTTGGAGCGGAGAACCAACCTCCTCTTTGGacacagaaaagaaaagagcttcgaTATTACATGACGAAGGAGAGGCTCCATCTCCAATTGCATTTGCTTCAGATCATCATGGTTCCCGAGAATTCAATGAGCTTGATAAGAAGTTTAAGCATAAAGGTACGGATAAAGGGAACCTTAGAGCTCACAAGTACATCAAATTAGGAAGAATTGAAGCAAGATTGGCTAAAGCAAGGTATTCCATCAGAGAAGCTAGCAAAATTCGAAATATGATATCAACCTTCCAAGATCCAGACTATGTTCCTCAAGGTCCAATTTACAGAAACGCCAATGCCTTTCATagGAGTTACCTAGAGATGGAAAAGGTGTTCAAGATTTTTGTGTATGAAGAAGGGGAGCCACCGCTGTTCCACAATGGTCTAAGCAAAGACATATATGCCACTGAGGGAAGATTCATACATGAAATGGAAAAGGGGAGGTACTATCGTACTTATGATCCAGATGAAGCTTTTGTGTATTATCTGCCCTTTAGTGTGGTTATGTTGGTCGAATATGTGTACGATCGTGGTTCCAATTATAATCTAGATCCCCTTGGCCTTGTTGTAAAAGACTACATACAGGTTATATCCCATAAACATCCTTTCTGGAATCGATCCTTGGGCCATGATCATTTCATGCTCTCTTGCCACGATTGGGGTCCTCTTGTATCTGGCTACGTGGATCTCTTGTACAACAATGCCATAAGGGTTCTTTGCAACGCAAATACATCTGAAGGATTCCAACCTGCAAAGGATGTGTCATTCCCTGAGATTAAACTTATGACCGGGGAAGTCACAGGTCTAGTAGGAGGGTATCCCCCATCTCAAAGGACCATCCTTGCTTTCTTTGCAGGTCACCTGCATGGCTATATAAGATACCTACTCTTAAATACGTGGAGAAACAAAGACCAAGATGTGCAGGTCTACGAGGAACTTCCTCAGGGAATCTCTTACTACACCAAGCTTAGAAGCAGCAAGTTCTGCCTGTGCCCAAGTGGTTATGAAGTAGCTAGTCCCAGAATAGTGGAAGCAATATTTGCAGAATGTGTGCCAGTACTGATTTCTGATTACTATGTTCCACCCTTTAGTGATGTTTTGAATTGGAATTCATTTTCAGTTCAAGTGGATGTGAAGGACATTCCCAATATCAAAAAGATACTCATGGGCATTTCAGAAAGGCAGTACTTGAGGATGTACAAAAGGGTGAAACAAGTGCAAAGACATTTTCTGCCTAATGAGCCCCCGAAGAGGTATGATATGTTCCATATGACTATCCATTCCATTTGGCTCAGGAGGTTGAatatccatattcgagatcagTAA 1500 0.4047 MRASIKSFFSSTCWPSHFVALFFVTSLVLVSCWSFLAPNFSSPLVSWSWSGEPTSSLDTEKKRASILHDEGEAPSPIAFASDHHGSREFNELDKKFKHKGTDKGNLRAHKYIKLGRIEARLAKARYSIREASKIRNMISTFQDPDYVPQGPIYRNANAFHRSYLEMEKVFKIFVYEEGEPPLFHNGLSKDIYATEGRFIHEMEKGRYYRTYDPDEAFVYYLPFSVVMLVEYVYDRGSNYNLDPLGLVVKDYIQVISHKHPFWNRSLGHDHFMLSCHDWGPLVSGYVDLLYNNAIRVLCNANTSEGFQPAKDVSFPEIKLMTGEVTGLVGGYPPSQRTILAFFAGHLHGYIRYLLLNTWRNKDQDVQVYEELPQGISYYTKLRSSKFCLCPSGYEVASPRIVEAIFAECVPVLISDYYVPPFSDVLNWNSFSVQVDVKDIPNIKKILMGISERQYLRMYKRVKQVQRHFLPNEPPKRYDMFHMTIHSIWLRRLNIHIRDQ 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2486 499 Coils Coil 489 499 - -
Ssu1g2486 499 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Ssu1g2486 499 PANTHER OS07G0188700 PROTEIN 98 496 - -
Ssu1g2486 499 Pfam Exostosin family 167 447 IPR040911 -
Ssu1g2486 499 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 98 496 IPR004263 GO:0006486|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2486 Ssu-Chr1 68752648 68755323 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2486 - - gmx:112997610 848.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2954 5 76258713 76261831 Ssu1g2486 1 68752648 68755323 PCT