Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2952 ATGAACCCTTTTGCTCTCAAGtcatccttcttcttctctggttcactcaacctttaTCTTCATCCCAATCACCACCATCTTACTTCAGCACCACCCAGGATTTCCATGCGCGTCGCTTCCAAGCAGGCCTATATCTGTCGCGATTGCGGGTATATTTACAATGACAGGGCTCCCTTTGAGAAGTTGCCTGATAACTATTTCTGCCCTGTGTGTGGTGCTCCAAAACGAAGATTTAGAACCTACGCACCGGCTATCACTAAAAATGCCAATGACACAGCTGTTAGAAAGGCACGAAAAGCTGAAATACAGAGAGATGAAGCAATTGGGAGGGCACTTCCTATTGCAATTGTCGTGGGAATTGCAGTGCTTGCaggattatattattatctgaACAGCCAATACTAG 405 0.4049 MNPFALKSSFFFSGSLNLYLHPNHHHLTSAPPRISMRVASKQAYICRDCGYIYNDRAPFEKLPDNYFCPVCGAPKRRFRTYAPAITKNANDTAVRKARKAEIQRDEAIGRALPIAIVVGIAVLAGLYYYLNSQY 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2952 134 PANTHER RUBREDOXIN-LIKE SUPERFAMILY PROTEIN 2 134 - -
Ssu5g2952 134 Pfam Rubredoxin 58 78 IPR024935 GO:0005506
Ssu5g2952 134 CDD rubredoxin 44 78 IPR024935 GO:0005506
Ssu5g2952 134 SUPERFAMILY Rubredoxin-like 41 85 - -
Ssu5g2952 134 Gene3D - 41 80 - -
Ssu5g2952 134 ProSiteProfiles Rubredoxin-like domain profile. 41 81 IPR024934 GO:0005506
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2952 Ssu-Chr5 76242025 76243285 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2952 - - gmx:100812204 253.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2952 5 76242025 76243285 Ssu5g2952 5 76242025 76243285 ECH
Ssu5g2952 5 76242025 76243285 Ssu1g2448 1 68139206 68140111 PCT