Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2934 atgaattcaaaaAGAGGTGGGAGACCTTTCACTATGGCAAACAATGATGATTCTTCTTCCAAAGGGAAAAATGTATTGGAATCTCTTCCAAAAATTGAGCAATTAACTAAAGGTGTTGCTGATGTTAACCTAGAGTCAGGACAGGATGATGGTGAATGGGTGGTATACGCAAGGAAATCCAAGAATAGAGCCCGAAGCAGTTCTGCAAAACCATGGAGTCCTCCGGTTCATAATTCTAGAGTAGTGGGAAATACAGAGATAGTTCACAAGCCAGTTACTTGGAATGGTGGAGGAGTTGGAAGGGCTTCTGGAAGTGGAAATCCTTGGCAGTCCCAAAATGCTAACTTGAAGAGACCTGCTGGCAGAGGAAATGGAAGGCCCCAGTTAACTGCAAGTGAATCTGAAAGCAACAATGTGACTTCAAACCCATTAATTGGACCTCCCCTGGAGCATGGGTGGAATTGGCAATCTAGAACTGGTTCCAAGCAGTCCACGAGTGTTAATGATAGCCTGGCAAAGGATGAAATTACAGAAGAGTCCCTTGTGAAGAATGACAATGTTGATGATGAGGGGGAGGAGGGCTTTGATGCTATGGAAGATACTGATGATGATCTAATGAGTGATGATTATGATTCGGATACTAGTCAAAAGAGCCATGAGACTCGTAAGAAAAGCAAATGGTTTAAggatttttttgagaatttggaTGGCCTATCTATGGAAAAGATCAATGAACCAGAGAGGCAGTGGCACTGTCCAGCTTGTCAAGGTGGTCCTGGTGCTATTGATTGGTACAGAGGGCTGCAGCCTCTGATGACTCATGCCAAAACAAAGGGGTCAAAAAGGGTGAAGATCCATAGGGAGTTTGCTGAGCTTTTGGATGAGGAATTGCGCAATAGAGGTACTGCAGTAATTCCATCTGGGGAAGTATTTGGTAAGTGGAAAGGTTTAAAAGATGAGGAGAAAGATCATGAAATAGTTTGGCCTCCGATGGTTGTCATTCAGAATACAAGGTTTGAACAGGATGAAAACGACAAGTGGATAGGTATGGGTAACCAGGagcttcttaattattttagcgCATATGATGCTGCGAAAGCTCGACACTCTTATGGCCCCCAAGGTCATCGGGGGATGAGTGTTTTGATATTTGAAGCCTCAGCTATAGGTTTTCTTGAGGCCGAGCGTCTACACAAGCACTTTGCAGAACAAGGAACTGACCGAGATGCTTGGTCTAGACGCCACCGTGAATTACTTCTCCCTGGTGGCAGGCGACAGCTCTATGGATACATGGCAATAAAAGAAGACCTGGAGTTTTTCAACAGACATTGCCAAGGTAAATCTAGACTCAAATATGACATGAGATCATACGAGGAGATGGTTGTAGACCAACTTCGACAAATGAGTGAGGACAACCagcaacttatttatttgaagGACAGGGatgtcaaaaaacaaaaacaaacaaaagctCTTGAAGAATCTTTGGGTATAGTGACTGAGAAGCTGCGAAGGACAATGGAGGAAAATCGCATTGTGAGGTTGAGAACTAAAATGCAACATGAAGAGAACAAGGAAGAGATGTACATGCAAGAACAATTTTTTAAGGACCAGATCAAAATCATTCATGATTCAAGGGCTGCAAAGGAAGAAGATTTTGAGAGGTTGCAGCAGGAGAAACGTGATAAGGTGAAGCAGTCAAGTACTAGCCCTTTAAATGAAGAGGAAGGGAGAGTCAAGGTGGATGAATATCTAAAATTTGTTGAGTTTCAAGATAAAGAAATGGAAAACTTTGTTGCTGAAGAGGAGAAACTCCGTCAAGCTCATAAAGACAATATTGCTGCAATGACGCGGAGGTACTGGGAGGAAAAGGTGCAGTTGGAGGAAACGTTTAATGAGGAGCTAGCCAAGCTCATGGAAAAGTATTCCCTTTCTCACCCAGAAACCAAGTCCAATGGTATTTGA 1965 0.4142 MNSKRGGRPFTMANNDDSSSKGKNVLESLPKIEQLTKGVADVNLESGQDDGEWVVYARKSKNRARSSSAKPWSPPVHNSRVVGNTEIVHKPVTWNGGGVGRASGSGNPWQSQNANLKRPAGRGNGRPQLTASESESNNVTSNPLIGPPLEHGWNWQSRTGSKQSTSVNDSLAKDEITEESLVKNDNVDDEGEEGFDAMEDTDDDLMSDDYDSDTSQKSHETRKKSKWFKDFFENLDGLSMEKINEPERQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKIHREFAELLDEELRNRGTAVIPSGEVFGKWKGLKDEEKDHEIVWPPMVVIQNTRFEQDENDKWIGMGNQELLNYFSAYDAAKARHSYGPQGHRGMSVLIFEASAIGFLEAERLHKHFAEQGTDRDAWSRRHRELLLPGGRRQLYGYMAIKEDLEFFNRHCQGKSRLKYDMRSYEEMVVDQLRQMSEDNQQLIYLKDRDVKKQKQTKALEESLGIVTEKLRRTMEENRIVRLRTKMQHEENKEEMYMQEQFFKDQIKIIHDSRAAKEEDFERLQQEKRDKVKQSSTSPLNEEEGRVKVDEYLKFVEFQDKEMENFVAEEEKLRQAHKDNIAAMTRRYWEEKVQLEETFNEELAKLMEKYSLSHPETKSNGI 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2934 654 MobiDBLite consensus disorder prediction 154 171 - -
Ssu5g2934 654 MobiDBLite consensus disorder prediction 1 25 - -
Ssu5g2934 654 MobiDBLite consensus disorder prediction 172 188 - -
Ssu5g2934 654 PANTHER PROTEIN SUPPRESSOR OF GENE SILENCING 3 14 645 - -
Ssu5g2934 654 MobiDBLite consensus disorder prediction 104 118 - -
Ssu5g2934 654 Gene3D XS domain 318 497 IPR038588 -
Ssu5g2934 654 MobiDBLite consensus disorder prediction 1 28 - -
Ssu5g2934 654 PANTHER PROTEIN SUPPRESSOR OF GENE SILENCING 3 14 645 IPR044287 GO:0031047|GO:0051607
Ssu5g2934 654 MobiDBLite consensus disorder prediction 189 209 - -
Ssu5g2934 654 Pfam XS domain 323 438 IPR005380 GO:0031047
Ssu5g2934 654 Coils Coil 505 532 - -
Ssu5g2934 654 Coils Coil 546 566 - -
Ssu5g2934 654 MobiDBLite consensus disorder prediction 550 576 - -
Ssu5g2934 654 Pfam XS zinc finger domain 252 290 IPR005381 GO:0031047
Ssu5g2934 654 Coils Coil 599 619 - -
Ssu5g2934 654 MobiDBLite consensus disorder prediction 127 144 - -
Ssu5g2934 654 MobiDBLite consensus disorder prediction 60 80 - -
Ssu5g2934 654 MobiDBLite consensus disorder prediction 66 80 - -
Ssu5g2934 654 MobiDBLite consensus disorder prediction 94 219 - -
Ssu5g2934 654 CDD RRM_like_XS 326 437 IPR005380 GO:0031047
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2934 Ssu-Chr5 76055817 76059192 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2934 - - gmx:100807738 1160.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2934 5 76055817 76059192 Ssu1g2464 1 68354051 68357493 PCT