Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu5g2927 | ATGGCTGAGGAGGCTCCAAACCAAACAAACGCACCACAAGAGTCAGTGGTGCAAGTGGTGGTAACCGATGTTCCGCAGCCTGAAAAAACAACACCCACTGCTCCGGTGGAAAGAGAACCTGAACCTCAGCCAGAGAAGAAGCCCGTCGAGGAAACCGTCACCCTCGAGACTCACCTCTCCAAACCCAACACCGACGACGACAGAGTCCCTGAATTCAAGGAAGAAAGCACCAAACTCTCCGACCTCCCAGAAAACGAGAACAAGGCACTCCAAGAGCTCAAGAAGCTCGTTCAAGACGCACTCAACAACCACGAGTTTTCTTCTtccaaagaagaaaagaagccaccagcaacaacaacaacttcaaCTGCTGACaaggaacaacaacaacaacaacaagaagccGTAACTGAAACTGATGCTGCCCCAGAAAAAACCGAGGAGGTTCAGGCTGAAACGAAGAAAGAGGAACAAGGAGAAGAAGTGAAAGAATTAACGAAGGAGGAAGAAGCCGCTGTGGATGATGATGGAGCCAAAACTGTAGAGGCCATTGAAGAGACTGTTGTTGCTGTGTCTTCTTCTGTTCAGCCTCAAGCTGAAGAGAAAGTTTCTGAAGCAGAACCCAAAGACGAAGCTTCGTCACCACTGCCACCCGAGGAGGTTTCCATTTGGGGGGTGCCGCTGCTTGCAGACGAGAGGAGCGATGTGATTCTGCTCAAGTTTCTGCGCGCCAGGGAGTTCAAAGTGAAGGAGGCGTTCGCGATGCTGAAGAACACGATCCGGTGGAGGAAGGAGTTCGGGATGGAGGAGTTGATGGAGGAGAAGCTGGGGGATGACTTGGAGAGGGTGGTGTTCATGCATGGGTTTGACAAGGAGGGTCACCCTGTGTGCTACAACATATATGGGGAGTTCCAGAACAAGGAGTTGTACAAGAAGACCTTCTCTGATGAGGAGAAGAGGGAGAAGTTTCTGAGGTGGAGAATTCAGTTCCTGGAGAAGAGTATAAGGAAGCTGGATTTCAACCCTGGTGGCATATGCACCATTGTTCAGGTCAATGACCTCAGGAACTCTCCTGGACCTGCCAAGTGGGAACTTAGACAAGCCACCAAACATGCCCTACAATTGCTTCAGGACAATTACCCTGAATTTGTTGCCAAACAGGTGTTCATTAATGTGCCATGGTGGTACCTGGCAGTGAATAGGATGATAAGCCCTTTTCTTACTCAGAGAACCAAAAGCAAGTTTGTCTTTGCTGGGCCTTCCAAATCAACGGAAACCCTTTTGAGATACATAGCTCCGGAGCAGCTTCCGGTGAAGTATGGTGGACTAAGCAAAGATGGGGAGTTCGGAAATACGGATGCTGTTACAGAAATCACATTGAGGCCGGCAGCAAAACATACGGTGGAATTTTCAGTTACTGAGAACTGCTTACTCTCTTGGGAGCTCAGAGCTATAGGGTGGGAAGTAAGCTATGGTGCAGAATTTGTGCCAAGCTCAGAAGGAAGCTACACAGTAATTGTCCAGAAGGCTAGAAAGGTTGCTTCATCAGAAGAACCAGTGCTTTGCAACAGTTTTAAAGTTGGTGAACCTGGGAAAATTGTTCTCACCATTGACAACACAAGTtctaagaagaagaagatctTGTACCGCTTGAAGACCAAGCCTTCCCCCTCTGACTAA | 1680 | 0.4637 | MAEEAPNQTNAPQESVVQVVVTDVPQPEKTTPTAPVEREPEPQPEKKPVEETVTLETHLSKPNTDDDRVPEFKEESTKLSDLPENENKALQELKKLVQDALNNHEFSSSKEEKKPPATTTTSTADKEQQQQQQEAVTETDAAPEKTEEVQAETKKEEQGEEVKELTKEEEAAVDDDGAKTVEAIEETVVAVSSSVQPQAEEKVSEAEPKDEASSPLPPEEVSIWGVPLLADERSDVILLKFLRAREFKVKEAFAMLKNTIRWRKEFGMEELMEEKLGDDLERVVFMHGFDKEGHPVCYNIYGEFQNKELYKKTFSDEEKREKFLRWRIQFLEKSIRKLDFNPGGICTIVQVNDLRNSPGPAKWELRQATKHALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSTETLLRYIAPEQLPVKYGGLSKDGEFGNTDAVTEITLRPAAKHTVEFSVTENCLLSWELRAIGWEVSYGAEFVPSSEGSYTVIVQKARKVASSEEPVLCNSFKVGEPGKIVLTIDNTSSKKKKILYRLKTKPSPSD | 559 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu5g2927 | 559 | MobiDBLite | consensus disorder prediction | 140 | 178 | - | - | |
| Ssu5g2927 | 559 | Gene3D | - | 196 | 265 | - | - | |
| Ssu5g2927 | 559 | PANTHER | PATELLIN-3 PROTEIN | 1 | 559 | - | - | |
| Ssu5g2927 | 559 | SMART | CRAL_TRIO_N_2 | 234 | 259 | IPR011074 | - | |
| Ssu5g2927 | 559 | MobiDBLite | consensus disorder prediction | 1 | 178 | - | - | |
| Ssu5g2927 | 559 | MobiDBLite | consensus disorder prediction | 190 | 218 | - | - | |
| Ssu5g2927 | 559 | Gene3D | - | 279 | 457 | IPR036865 | - | |
| Ssu5g2927 | 559 | PRINTS | Cellular retinaldehyde-binding protein signature | 400 | 419 | - | - | |
| Ssu5g2927 | 559 | PRINTS | Cellular retinaldehyde-binding protein signature | 237 | 259 | - | - | |
| Ssu5g2927 | 559 | Pfam | CRAL/TRIO domain | 283 | 442 | IPR001251 | - | |
| Ssu5g2927 | 559 | CDD | SEC14 | 279 | 443 | IPR001251 | - | |
| Ssu5g2927 | 559 | SUPERFAMILY | CRAL/TRIO domain | 283 | 445 | IPR036865 | - | |
| Ssu5g2927 | 559 | SUPERFAMILY | Supernatant protein factor (SPF), C-terminal domain | 454 | 553 | IPR036598 | - | |
| Ssu5g2927 | 559 | ProSiteProfiles | CRAL-TRIO lipid binding domain profile. | 273 | 448 | IPR001251 | - | |
| Ssu5g2927 | 559 | SUPERFAMILY | CRAL/TRIO N-terminal domain | 78 | 274 | IPR036273 | - | |
| Ssu5g2927 | 559 | Coils | Coil | 148 | 175 | - | - | |
| Ssu5g2927 | 559 | ProSiteProfiles | GOLD domain profile. | 452 | 553 | IPR009038 | - | |
| Ssu5g2927 | 559 | SMART | sec14_4 | 278 | 445 | IPR001251 | - | |
| Ssu5g2927 | 559 | MobiDBLite | consensus disorder prediction | 39 | 93 | - | - | |
| Ssu5g2927 | 559 | MobiDBLite | consensus disorder prediction | 113 | 139 | - | - | |
| Ssu5g2927 | 559 | PANTHER | PATELLIN-1 | 1 | 559 | IPR044834 | GO:0008289 | |
| Ssu5g2927 | 559 | Pfam | CRAL/TRIO, N-terminal domain | 218 | 258 | IPR011074 | - | |
| Ssu5g2927 | 559 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Ssu5g2927 | 559 | Gene3D | GOLD domain | 458 | 553 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu5g2927 | Ssu-Chr5 | 75965166 | 75968189 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu5g2927 | 238 | 437 | Acyl Lipid Metabolism Gene Families | AT1G55840 | 28.436 | 2.29e-10 | 60.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu5g2927 | - | - | gmx:100788197 | 868.226 |
Event-related genes