Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2484 ATGGCTGAGGAAGTTGCAAAGACAAGCACAACTCAAGAGGAAGTGGTGGTCACTGACGTGGCACCATCTGACAAACAAGACACCAATGTTGTGGAGAAAGACGCtgaacaacaacgacaacaacaaGAAGCATCGCCAGTGAAGGAGAAAACTCCCGAAACCGAAACCGAAACCGAGACGGAGGTTTCCAAACCCAGCGGCGAAGACAACATTCCCAAATCCGGCTCCTTCAAGGAAGAAAGCACCATAGTCTCCGACCTCCCCGACACCGAGAAAAAGGCGCTGCAAGAACTCAAGCACCTCATTCAAGAAGCCCTGAGCAAACGCGAGTTCTCCGCGCCTCAGAATAACCCACCCAAAGAAGAAAAGGCTGACGTGGCAGAGAAGGAAGAACAAGTTGCTGCTGCTGACGTGGCAGAACCGGCAGCAAAAGAAGCTGCAGAAGCGAAGGAAACTGAAACTGAAACCGAAGCTGAGGTGGTTGAAGAGAAAGTGGGTGTTTCTGCTGCTTCTGTTGACGAGGACGGAGCGAAGACCGTGGAGGCTATTGAAGAGAGCGTTGTGTCCGTGACTGTGTCTGAGGAAGCGAAGGTGGAAGAGGCGGAAGAGGTTTCGATTTGGGGAGTGTCGCTGCTTGCGGACGAGAGGAGCGACGTGATTCTGCTGAAGTTTCTGCGCGCGAGGGACTTCAAGGTGAAGGAGGCGTTCGCGATGATAAAGGGCACGATTCGGTGGAGGAAGGAGTTCGGGATGGAGGAGTTGTTGGAGGAGGAGCTGGGTGGCGATTTGGAGAAGGCCGTGTACATGCACGGCTTCGACAAGGAGGGTCACCCCGTGTGTTACAACATCTATGGGGAGTTCCAGAACAAGGAGTTGTATAAGAAGACTTTCTCCGATGAGGAGAAGAGGCACAGGTTCCTCAGGTGGAGAATTCAGTTCCTGGAGAAGAGTATCAGGAAGCTGGATTTTACCCCCGGTGGCATAAGCACCATTGTTCAAGTCAATGATCTCAAGAATTCTCCTGGACCTGCCAAGTGGGAGCTTAGGCAAGCAACCAAACAGGCCCTTCAGTTGCTTCAGGATAATTATCCTGAATTTGTCGCCAAACAGGTGTTTATCAATGTGCCATGGTGGTACTTGGCAGTGAACAGGATGATAAGCCCTTTTCTTACTCAGAGAACCAAAAGCAAGTTTGTCTTTGCTGGGCCTTCCAAATCAGCTGAGACACTTTTGAGATACATTGCTCCAGAGCAACTTCCGGTTAAGTATGGTGGACTAAGCAAAGATGGGGAATTCGGAATTTCCGATGCTGTTACAGAAATTACGGTGAGGCCAGCAGCAAAACATACCGTGGAGTTTCCGGTTACTGAGAACTGCCTACTCTCTTGGGAGCTCAGAGTAATAGGGTGGGACGTAAGTTATGGTGCAGAGTTTGTGCCAAGTTCAGAGGGAAGCTATACTGTAATCATCCAGAAGGCTAGAAAGGTTGCTTCATCAGAAGAACCGGTGCTTtgcaacaattataaaattggtgAACCTGGGAAAGTGGTTCTCACCATTGACAATCAAAGCTCTAAGAAGAAGAAGCTCTTGTACCGCTTGAAGGTTAAGCCTTCCTCTTCTGACTGA 1629 0.488 MAEEVAKTSTTQEEVVVTDVAPSDKQDTNVVEKDAEQQRQQQEASPVKEKTPETETETETEVSKPSGEDNIPKSGSFKEESTIVSDLPDTEKKALQELKHLIQEALSKREFSAPQNNPPKEEKADVAEKEEQVAAADVAEPAAKEAAEAKETETETEAEVVEEKVGVSAASVDEDGAKTVEAIEESVVSVTVSEEAKVEEAEEVSIWGVSLLADERSDVILLKFLRARDFKVKEAFAMIKGTIRWRKEFGMEELLEEELGGDLEKAVYMHGFDKEGHPVCYNIYGEFQNKELYKKTFSDEEKRHRFLRWRIQFLEKSIRKLDFTPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLRYIAPEQLPVKYGGLSKDGEFGISDAVTEITVRPAAKHTVEFPVTENCLLSWELRVIGWDVSYGAEFVPSSEGSYTVIIQKARKVASSEEPVLCNNYKIGEPGKVVLTIDNQSSKKKKLLYRLKVKPSSSD 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2484 542 MobiDBLite consensus disorder prediction 121 135 - -
Ssu1g2484 542 Pfam CRAL/TRIO domain 265 425 IPR001251 -
Ssu1g2484 542 MobiDBLite consensus disorder prediction 1 25 - -
Ssu1g2484 542 PANTHER PATELLIN-1 12 542 IPR044834 GO:0008289
Ssu1g2484 542 MobiDBLite consensus disorder prediction 67 83 - -
Ssu1g2484 542 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 436 538 IPR036598 -
Ssu1g2484 542 SMART CRAL_TRIO_N_2 217 242 IPR011074 -
Ssu1g2484 542 Pfam CRAL/TRIO, N-terminal domain 200 240 IPR011074 -
Ssu1g2484 542 MobiDBLite consensus disorder prediction 46 66 - -
Ssu1g2484 542 CDD SEC14 267 426 IPR001251 -
Ssu1g2484 542 MobiDBLite consensus disorder prediction 143 162 - -
Ssu1g2484 542 SUPERFAMILY CRAL/TRIO N-terminal domain 84 258 IPR036273 -
Ssu1g2484 542 SMART sec14_4 261 428 IPR001251 -
Ssu1g2484 542 Coils Coil 144 164 - -
Ssu1g2484 542 PANTHER PATELLIN-3 PROTEIN 12 542 - -
Ssu1g2484 542 MobiDBLite consensus disorder prediction 84 106 - -
Ssu1g2484 542 SUPERFAMILY CRAL/TRIO domain 266 428 IPR036865 -
Ssu1g2484 542 PRINTS Cellular retinaldehyde-binding protein signature 220 242 - -
Ssu1g2484 542 PRINTS Cellular retinaldehyde-binding protein signature 383 402 - -
Ssu1g2484 542 Gene3D GOLD domain 441 537 - -
Ssu1g2484 542 ProSiteProfiles GOLD domain profile. 435 536 IPR009038 -
Ssu1g2484 542 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 256 431 IPR001251 -
Ssu1g2484 542 MobiDBLite consensus disorder prediction 1 162 - -
Ssu1g2484 542 Gene3D - 184 440 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2484 Ssu-Chr1 68722407 68725946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2484 221 420 Acyl Lipid Metabolism Gene Families AT5G47730 28.241 8.86e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2484 - - gmx:100805585 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2484 1 68722407 68725946 Ssu1g2484 1 68722407 68725946 ECH
Ssu5g2927 5 75965166 75968189 Ssu1g2484 1 68722407 68725946 PCT