Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2925 ATGAATTCTTCAATTCATGCCCCTTCACcaccttcctcttcttcttgctCCTATAACCGCCCTCCTCCATGCCTCACTCACGCTTCTCGTAATTTCAAGTTTCCTCTgCTGTTGCCACAAGCAATTCGTTCCTCTCAAAAGATGTATCACAGCTCTGGAGGCCATGTGGAGGCTTCTACTAACACTAATCCCTTGAAAAACTATGTAATGGGCAGAAGTACTTCAGGATGGTTTGAAACACAACCCTTGGTTTCCAAGCAATTAATCAACAGGCGCTTGTTGCCAGTGGAAGCTTTAGTAACTCCAACAGTTCAAGATTTTTCTGATACACCTCTTACTGGTGATGATAAGATTGGAGTGTTATTGTTGAACCTTGGAGGTCCAGAGACTTTAGAAGATGTGCAGCCTTTTTTGTTTAACCTTTTTGCTGACCCAGATATTATACGGCTGCCAAGGTTATTTAGCTTTCTTCAAAAGCCATTGGCTCAATTTGTATCTGTTTTAAGAGCACCAAAGAGCAAAGAAGGCTATGCTTCAATTGGGGGTGGATCTCCTCTTAGACGTATAACTGATGCTCAGGCTGAAGAGTTGAGGAAATCTCTTTGGGCAAAGAATGTCCCGGCCAAAGTGTATGTTGGCATGCGTTACTGGCATCCATTCACTGAGGAGGCCATTGAACAGATTAAAAGGGATGGAATTACAAAGCTTGTTGTGCTTCCACTTTATccacaattttcaatttcaaccaGTGGTTCAAGTCTTCGTCTCTTGGAGAGTATATTCAGAGAGGATGAGTATCTAGTCAACATGCAGCATACAGTAATTCCTTCATGGTACCAGCGTGAAGGATACATTAAGGCCATggcaaatttaattgaaaaagagCTGAAAGGTTTTGACTGCCCTGAGAAGGTCATGATATTCTTTAGTGCACATGGGGTTCCTCTTGCTTATGTAGAAGAGGCTGGTGATCCATATAAGGCAGAGATGGAGGAATGTGTTGATTTGATCATGGAAGAGctagaaaagagaaagataactAATGCATACACCCTTGCTTATCAGaGTAGAGTTGGACCTGTGGAATGGTTAAAACCCTATACAGATGAGACAATAATTGAACTTGGGAAAAAGGGAGTAAAAAGTCTGCTGGCTGTACCAATTAGCTTTGTCAGCGAGCATATTGAAACTCTAGAAGAAATTGATGTTGAGTACAAAGAATTGGCTCTAAACTCTGGTATAGAAAAATGGGGACGTGTTCCTGCTCTAGGATGTGAACCTACCTTCATTTCAGATTTGGCAGATGCTGTAATTGAGAGTCTCCCATATGTTGGTGCGATGGCGGTTTCAAACCTTGAAGCTCGACAGTCTTTGGTTCCCCTGGGCAGTGTAGAAGAGTTATTGGCAGCATATGACTCACAACGTAGGGAGTTGCCACCGCCAGTAATTGTGTGGGAATGGGGATGGACAAAAAGTGCTGAAACTTGGAATGGAAGAGCAGCTATGCTTGCTGTGCTTCTTCTGTTGTTTTTAGAGGTCACCACTGGTGAGGGATTCCTGCACCACTGGGGAATATTGCCCTTGTTTAGGTGA 1593 0.4105 MNSSIHAPSPPSSSSCSYNRPPPCLTHASRNFKFPLLLPQAIRSSQKMYHSSGGHVEASTNTNPLKNYVMGRSTSGWFETQPLVSKQLINRRLLPVEALVTPTVQDFSDTPLTGDDKIGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRLFSFLQKPLAQFVSVLRAPKSKEGYASIGGGSPLRRITDAQAEELRKSLWAKNVPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYIKAMANLIEKELKGFDCPEKVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIELGKKGVKSLLAVPISFVSEHIETLEEIDVEYKELALNSGIEKWGRVPALGCEPTFISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLAAYDSQRRELPPPVIVWEWGWTKSAETWNGRAAMLAVLLLLFLEVTTGEGFLHHWGILPLFR 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2925 530 SUPERFAMILY Chlorophyll a-b binding protein 485 525 - -
Ssu5g2925 530 Gene3D - 117 440 - -
Ssu5g2925 530 CDD Ferrochelatase_C 286 424 IPR033644 -
Ssu5g2925 530 PANTHER FERROCHELATASE 56 451 IPR001015 GO:0004325|GO:0006783
Ssu5g2925 530 Pfam Ferrochelatase 117 440 IPR001015 GO:0004325|GO:0006783
Ssu5g2925 530 CDD Ferrochelatase_N 118 280 IPR033659 -
Ssu5g2925 530 ProSitePatterns Ferrochelatase signature. 307 328 IPR019772 GO:0004325|GO:0006783
Ssu5g2925 530 SUPERFAMILY Chelatase 116 447 - -
Ssu5g2925 530 Gene3D - 279 422 - -
Ssu5g2925 530 PANTHER FERROCHELATASE-1, CHLOROPLASTIC/MITOCHONDRIAL 56 451 - -
Ssu5g2925 530 TIGRFAM hemH: ferrochelatase 116 441 IPR001015 GO:0004325|GO:0006783
Ssu5g2925 530 Hamap Coproporphyrin III ferrochelatase [cpfC]. 116 441 IPR001015 GO:0004325|GO:0006783
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2925 Ssu-Chr5 75929992 75935871 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2925 K01772 - gmx:100803481 1000.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2925 5 75929992 75935871 Ssu1g2487 1 68759194 68765551 PCT