Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2487 ATGAACTCTCCAATTCATGCCCCTTCATCATCagcatcttcttcttcttcttcttcctcctatATGCTTCGTCCTCCTCCATGTCTCACTCATGCTTCTCGTAACCTCAAGTGCCCTCTgTTGTTGCCACAGAAAATCTGTACCTCTCAAAAGAAGTACCGCTGCTTTGGAGCTCATGTGGAGGCTTCTTTTAACACTAATCCCTTGAAAAATTACACATCAGCCAGATGTTCTCCGTGGTGGTCTGAAGCACAATCCTTGGTTTCTAACCAATCACTCAACAAACAGTTGTTCTCCGTAGGGTCTTTGGCAACTCCAACAGCTCAAGATGTTTCTGATACCACTCTTATCGGTGATGATAAGATTGGAGTGTTACTGTTAAACCTTGGAGGTCCAGAGACTCTAGACGATGTGCAGCCTTTTTTGTTTAACCTTTTTGCTGACCCGGATATAATACGATTGCCAAGGATATTTAGTTTTCTTCAAAAGCCATTGGCCCGATTTGTATCAGTCGTAAGGGCCCCAAAGAGCAAAGAAGGCTATGCTTCAATTGGTGGTGGCTCTCCTCTCAGGCAGTTGAGGAAATCTCTTTGGGAAAAGAATGTCCCAGCTAATGTGTATGTTGGCATGCGTTACTGGCATCCTTTCACTGAAGAAGCTATTGAGCAGaTTAAAAGGGATGGAATTACAAAGCTTGTCGTTCTTCCACTTTATCCGCAATTTTCAATATCAACCAGTGGCTCAAGCCTACGTCTACTGGAGAATATATTCAGAGAGGATGAGTATCTAGTCAACATGCAACACACAGTAATACCATCATGGTATCAACGTGAAGGATACATGAAGGCCATggcaaatttaattgaaaaagagCTGAAGAGTTTTGACTGCCCTGAGGAGGTCATGATATTCTTTAGTGCACATGGGGTGCCTCTTGCTTATGTGGAAGAGGCTGGTGATCCATACAAGGCTGAGATGGAGGAATGTGTGGATTTGATCATGGAAGAACTTGAGACAAGAAAGATAACTAATGCCTACACCCTTGCTTATCAGaGTAGAGTTGGACCAGTTGAATGGCTAAAACCCTATACAGACGAGACAATAGTTGAACTGGGAAAAAAGGGAGTGAAAAGTCTGCTGGCTGTTCCAATTAGCTTTGTCAGTGAGCATATCGAAACTCTAGAGGAAATTGATGTTGAATACAAAGAATTGGCTCTACAATCTGGTATCGAAAAGTGGGGGCGTGTTCCTGCTCTAGGTTGCGAACCTACCTTCATTTCTGATTTGGCAGATGCTGTTATTGAGAGTCTCCCATATGTTGGTGCCATGGCAGCTTCAAACCTTGAAGCTCGACAGTCTCTGGTTCCACTCGGCAGTGTAGAAGAGTTATTGGCGGCATATGATTCACAACGCAGGGAGTTGCCACCACCAGTTGTAGTGTGGGAATGGGGTTGGACAAAAAGTGCTGAAACTTGGAATGGAAGAGTAGCTATGCTGGCTGTGCTTCTTCTTCTGTTTTTTGAAGTCACTGCAGACAAGGGACTTCTGCACCAGTTGGGAATATGGCCCTCGCTTAGGTGA 1581 0.4295 MNSPIHAPSSSASSSSSSSSYMLRPPPCLTHASRNLKCPLLLPQKICTSQKKYRCFGAHVEASFNTNPLKNYTSARCSPWWSEAQSLVSNQSLNKQLFSVGSLATPTAQDVSDTTLIGDDKIGVLLLNLGGPETLDDVQPFLFNLFADPDIIRLPRIFSFLQKPLARFVSVVRAPKSKEGYASIGGGSPLRQLRKSLWEKNVPANVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLENIFREDEYLVNMQHTVIPSWYQREGYMKAMANLIEKELKSFDCPEEVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELETRKITNAYTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLAVPISFVSEHIETLEEIDVEYKELALQSGIEKWGRVPALGCEPTFISDLADAVIESLPYVGAMAASNLEARQSLVPLGSVEELLAAYDSQRRELPPPVVVWEWGWTKSAETWNGRVAMLAVLLLLFFEVTADKGLLHQLGIWPSLR 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2487 526 MobiDBLite consensus disorder prediction 1 20 - -
Ssu1g2487 526 SUPERFAMILY Chelatase 120 443 - -
Ssu1g2487 526 TIGRFAM hemH: ferrochelatase 120 437 IPR001015 GO:0004325|GO:0006783
Ssu1g2487 526 CDD Ferrochelatase_N 122 276 IPR033659 -
Ssu1g2487 526 Hamap Coproporphyrin III ferrochelatase [cpfC]. 120 437 IPR001015 GO:0004325|GO:0006783
Ssu1g2487 526 PANTHER FERROCHELATASE 71 448 IPR001015 GO:0004325|GO:0006783
Ssu1g2487 526 CDD Ferrochelatase_C 282 420 IPR033644 -
Ssu1g2487 526 Pfam Ferrochelatase 121 436 IPR001015 GO:0004325|GO:0006783
Ssu1g2487 526 Gene3D - 121 436 - -
Ssu1g2487 526 Gene3D - 275 418 - -
Ssu1g2487 526 ProSitePatterns Ferrochelatase signature. 303 324 IPR019772 GO:0004325|GO:0006783
Ssu1g2487 526 PANTHER FERROCHELATASE-1, CHLOROPLASTIC/MITOCHONDRIAL 71 448 - -
Ssu1g2487 526 SUPERFAMILY Chlorophyll a-b binding protein 481 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2487 Ssu-Chr1 68759194 68765551 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2487 K01772 - gmx:100785669 969.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2487 1 68759194 68765551 Ssu1g2487 1 68759194 68765551 ECH
Ssu5g2925 5 75929992 75935871 Ssu1g2487 1 68759194 68765551 PCT