Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu5g2924 | ATGTTGATGAACAATATTGGAGATCGCATTCACCAGCAGGTGATTGATACAGGAATTATTCCTATTCTTGTGAAAATTGTGAAGAAAAAATCAGATTTGCCTGTAAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACGTCCCTTGGTGGTGCTTCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGAGTGCTGGGGTGCAGTTTCCTCAAAGGGATCAAGTGACCCAATCAAATCATCCTCGTTCACAACCTAATAGGACTAACAATGTACCAAACAGGGAGCAGACCCCGCCTAGACATCAGCAAGCAGAGTCCCAAACTGTTCCTGAATCTAGCATTATTCAAAAGGCTAGTAATGCAttagaagttttaaaagaaGTCCTTGATGCTGTTGATGCCCAACATCCTCAGgcAGCAAGAGACGAATTCACCCTTGACCTTGTTGAACAATGTTCATTTCAGAAGCAAAGGGTAATGCATCTAGTGATGGCTTCTCGGGATGAGAGGATAGTTTCTCGagcaattgaattaaatgagCAACTTCAGAAAGTTCTTGCAAGACACGATAGCCTTCTTGCAAGACATGATAGCCGTCTTTCAGGCAGAGCCACAACAATAGCTGATCACTTGGACTGCGAAGAAgcagaggaggaagaagagcCAGAACAGTTATTCCGGAGATTACGCAAAGGAAAGGCTTGTGCAAGGcctgaagaagaagaaagtgaaCCTGAGTTCCCTCACTTGGGTTTGCTTGAAGAGAGACTCAACCGTCCGTTAATAAGACCTTTAGCTCTGGAGCCATCTCGAGATGCTAATACTCGTCCTGCACCTGCTGTGATTCCTCCTCATATGGCAATTCCACCACCACCTGCGAAGCACATTGAGAGGGAGAGATATTTTCAGGAAACTAAAAAGGATGGTGCTACATTGGCTGGCCACTTGAGAGGACTCTCCTTGCATAGTCACAATGGCAGCAGTTCTAACAGTGGAAGCTTTGATTTTAGTGATTGA | 1032 | 0.4118 | MLMNNIGDRIHQQVIDTGIIPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYNAYYDLVSAGVQFPQRDQVTQSNHPRSQPNRTNNVPNREQTPPRHQQAESQTVPESSIIQKASNALEVLKEVLDAVDAQHPQAARDEFTLDLVEQCSFQKQRVMHLVMASRDERIVSRAIELNEQLQKVLARHDSLLARHDSRLSGRATTIADHLDCEEAEEEEEPEQLFRRLRKGKACARPEEEESEPEFPHLGLLEERLNRPLIRPLALEPSRDANTRPAPAVIPPHMAIPPPPAKHIERERYFQETKKDGATLAGHLRGLSLHSHNGSSSNSGSFDFSD | 343 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu5g2924 | 343 | MobiDBLite | consensus disorder prediction | 275 | 297 | - | - | |
| Ssu5g2924 | 343 | SUPERFAMILY | GAT-like domain | 79 | 197 | - | - | |
| Ssu5g2924 | 343 | MobiDBLite | consensus disorder prediction | 78 | 118 | - | - | |
| Ssu5g2924 | 343 | MobiDBLite | consensus disorder prediction | 310 | 343 | - | - | |
| Ssu5g2924 | 343 | ProSiteProfiles | VHS domain profile. | 1 | 75 | IPR002014 | GO:0035091|GO:0043130 | |
| Ssu5g2924 | 343 | Pfam | GAT domain | 125 | 198 | IPR004152 | GO:0035091|GO:0043130 | |
| Ssu5g2924 | 343 | ProSiteProfiles | GAT domain profile. | 111 | 199 | IPR004152 | GO:0035091|GO:0043130 | |
| Ssu5g2924 | 343 | SUPERFAMILY | ENTH/VHS domain | 1 | 75 | IPR008942 | - | |
| Ssu5g2924 | 343 | CDD | GAT_GGA_like_plant | 119 | 197 | - | - | |
| Ssu5g2924 | 343 | Coils | Coil | 180 | 200 | - | - | |
| Ssu5g2924 | 343 | Gene3D | - | 109 | 206 | IPR038425 | - | |
| Ssu5g2924 | 343 | Coils | Coil | 120 | 140 | - | - | |
| Ssu5g2924 | 343 | MobiDBLite | consensus disorder prediction | 326 | 343 | - | - | |
| Ssu5g2924 | 343 | Gene3D | - | 1 | 73 | IPR008942 | - | |
| Ssu5g2924 | 343 | PANTHER | TOM1-LIKE PROTEIN | 1 | 343 | IPR044836 | GO:0035091|GO:0043130|GO:0043328 | |
| Ssu5g2924 | 343 | PANTHER | ENTH/VHS/GAT FAMILY PROTEIN | 1 | 343 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu5g2924 | Ssu-Chr5 | 75920540 | 75924101 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu5g2924 | - | - | gmx:100802949 | 538.11 |
Event-related genes