Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2488 ATGGCAGCTGAGCTAGTCAATGTTGCAACAAGTGAGAAACTGGCTGAAACTGATTGggcaaaaaatattgaaatctgTGAGTTGGTTGCTCATGATAAAAGGCAAGCTAGAGATGTTGTTAAAGCTATAAAAAAGAGACTAGGAAGCAAACACCCCAATACTCAACTCTATTCTGTCATGTTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATGAGCAGGTGATTGATACTGGAATTATTCCTATTCTAGTAAAAATTGTGAAGAAAAAGTCTGATTTGCCTGTGAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTTGGTGGTGCATCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGAGTGCTGGAGTGCAGTTTCCTCAAAGGGATCAAGTGGTCCAATCAAATCATCCTACTTCACAACCAAGTAGGACTGGTAATGTACCAAACAGGGAGCAGGCCGCACCTAGACATGAAGCGGTTGCTCAGCAAGCAGAGTCCCAGACTGTCCCTGAATCTAGCATTATTCAAAAGGCTAGCAATGCATTAGAAGTACTAAAAGAGGTCCTTGATGCTGTTGATGCTCAAAATCCTCAGGGAGCAAGGGATGAATTCACCCTTGACCTTGTAGAACAATGTTCCTTTCAAAAGCAAAGGGTTATGCATCTTGTGATGGCTTCTCGAGATGAGAGGATAGTTTCTCGAGCAATTGAATTGAATGAGCAGCTTCAGAAAGTTCTTGCAAGACATGATGACCTTCTTGCTGGCAGAGCTACAACAACTGCCACTCGGTTTGACCATGAAGAAGCCGAGGAGGAAGAGGAGCCTGAACAGTTAGTCCGAAGATTGCGCAAGGGAAAGGCTTGTGCAAGGCCTGAAGATGAGGAGACTGAAACCGACATTCCTCGCTTGGATTTGCTCGGAGAGAGACTCAATCGTCCACTAATACGACCACTCTCGTTGGAGCCACCATCTCGAGAAGCCGATACTCGACCTCCACCTGTTGTGATCCCACCTCCACGGCCGAAACAGAATGGGGAGGTTCCTCATCACGTAGCAATTCCACCACCACCTGCAAAGCACATTGAGAGGGAGAGGTTTTTTCAGGAAAACAAGGATGGTTCTAATTTGTCTGGCCACATGAGAGGCCTCTCCTTACATAGTCGTAATGGCAGCAGCTCTCACAGTGGAAGCTTTGATTTTAGCGATTGA 1245 0.4442 MAAELVNVATSEKLAETDWAKNIEICELVAHDKRQARDVVKAIKKRLGSKHPNTQLYSVMLLEMLMNNIGEHIHEQVIDTGIIPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYNAYYDLVSAGVQFPQRDQVVQSNHPTSQPSRTGNVPNREQAAPRHEAVAQQAESQTVPESSIIQKASNALEVLKEVLDAVDAQNPQGARDEFTLDLVEQCSFQKQRVMHLVMASRDERIVSRAIELNEQLQKVLARHDDLLAGRATTTATRFDHEEAEEEEEPEQLVRRLRKGKACARPEDEETETDIPRLDLLGERLNRPLIRPLSLEPPSREADTRPPPVVIPPPRPKQNGEVPHHVAIPPPPAKHIERERFFQENKDGSNLSGHMRGLSLHSRNGSSSHSGSFDFSD 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2488 414 MobiDBLite consensus disorder prediction 273 316 - -
Ssu1g2488 414 Gene3D - 175 275 IPR038425 -
Ssu1g2488 414 SUPERFAMILY GAT-like domain 144 267 - -
Ssu1g2488 414 MobiDBLite consensus disorder prediction 350 369 - -
Ssu1g2488 414 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Ssu1g2488 414 PANTHER ENTH/VHS/GAT FAMILY PROTEIN 1 414 - -
Ssu1g2488 414 PANTHER TOM1-LIKE PROTEIN 1 414 IPR044836 GO:0035091|GO:0043130|GO:0043328
Ssu1g2488 414 MobiDBLite consensus disorder prediction 142 184 - -
Ssu1g2488 414 Pfam VHS domain 5 111 IPR002014 GO:0035091|GO:0043130
Ssu1g2488 414 Coils Coil 187 207 - -
Ssu1g2488 414 MobiDBLite consensus disorder prediction 287 316 - -
Ssu1g2488 414 CDD VHS 2 130 - -
Ssu1g2488 414 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Ssu1g2488 414 MobiDBLite consensus disorder prediction 379 414 - -
Ssu1g2488 414 Pfam GAT domain 192 267 IPR004152 GO:0035091|GO:0043130
Ssu1g2488 414 MobiDBLite consensus disorder prediction 383 414 - -
Ssu1g2488 414 SUPERFAMILY ENTH/VHS domain 4 140 IPR008942 -
Ssu1g2488 414 MobiDBLite consensus disorder prediction 350 367 - -
Ssu1g2488 414 MobiDBLite consensus disorder prediction 142 161 - -
Ssu1g2488 414 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Ssu1g2488 414 CDD GAT_GGA_like_plant 186 264 - -
Ssu1g2488 414 Gene3D - 2 136 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2488 Ssu-Chr1 68767092 68772177 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2488 - - gmx:100785131 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2488 1 68767092 68772177 Ssu1g2488 1 68767092 68772177 ECH
Ssu5g2924 5 75920540 75924101 Ssu1g2488 1 68767092 68772177 PCT