Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2921 ATGCAAGAGACGCTCCTCACTCTCCCTCTCTCCCCCGAAGACATCCACATTCGCGCCAAGAAGAAGAAACCCCAACAGCACCACCACAAAGCGGGAAAcgagaacaacaacaacagcagcCACCCCACTCGCGTGTCGCGGCGCGTGAGTCCGGCGGTGTCTCCGGCATCCTCCGGCGGCGAGAAGTCCCTCCCGAACGGCGACATCTACAGCGGCGCCCTGTCGGGGAACGCGCCGCACGGCACCGGGAAGTACCTCTGGTCCGATGGGTGCATGTACGAGGGCGAGTGGCGGAAGGGAAAAGCCTGCGGCAAAGGACGGTTCTCGTGGCCCTCGGGGGCGACGTACGAAGGCGAGTTCAAGTCGGGTCGAATAGACGGGTTCGGGTCGTTCATCGGCGTGGACGGCGACATGTACAGGGGCTCCTGGGTCGCCGACCGGAAGCACGGGTTCGGGGAGAAAAGATACGGCAATGGTGACGTGTACGCGGGGTGGTGGAAGTGCAACCTGCAGGAGGGGGAGGGGAGGTACACGTGGCGGAACGGGAACGAGTACGTCGGGGAGTGGAAGAGCGGCGTTATCTCCGGCAAAGGGGTTTTGGTTTGGGCGAATGGGAACCGTTACGAAGGGTATTGGGAGAACGGCGTGCCTGTGGGGAAGGGGGTTTTCACGTGGTGTGACGGGAGCACGTGCGCGGGGAACTGGGGGAAGGAGTTTGTGGAGGAAGCACGTGTCGAGAAGGTGAAGCGGTGTTCGGTGGATGGGTGCAAGAGTGTGAGTTTTCCTAGGATTTGTATTTGGGAGTTGGATGGGGAAGCCGGGGACATAACGTGCGACATTGTTCACAATGCCGAGGCTTCTATGTTTTATAGGGACGGTACCAGTGAGTCTGAGAACGGTGGAGATGATAATGGGAATGGGGTTTTGCAGAAGAGTCCTTGTTGGTCTCTTGATGGTTCTGCTGGTGAGGTTAAGAAGCCTGGTCAAACTGTGTCCAGAGGGCATAAGAATTATGATCTCATTCTTAATCTTCAACTGGGTATTAGATACACTGTTGCCAAGCATGCTTCTATTGTGAGAGAGCTAAGGCCAGGGGATTTTGATCCCAAGGAGAAGTTCTGGACGAGGTTTCCACTGGAAGGGTCTAAGTTTACACCCCAACATCAATCTGTGGACTTCAGGTGGAAAGACTACTGTCCCATGGTGTTCAGACATCTAAGGGAATTATTTGCCATAGATCCGGCGGATTACATGCTTGCTATTTGCGGAAGTGACACACTTAGGGAGATGTCTTCTCCGGGCAAAAGTGGAAGCATCTTTTACCTCACTCAAGATGACCGCTTCATAATTAAGACTGTTAAGAAGTCTGAAGTCAAGGTGCTCATTAGGATGCTTCCAAGTTACTACCAACATGTTTGTCAGTACAAGAACTCCTTGGTGACAGCATTCCTGGGCGTGCATTGTGTCAAACCTGTTGGAGGTCAAAAGACCCGGTTTATTGTAATGGGCAATATGTTTTGCTCGGAGTACCGGATCCACAAGAGGTTTGATCTCAAAGGTTCTTCTCATGGTCGAACAACGGATAAGCCACGAGAGGAGATTGATGAGACTACCACTCTCAAAGACCTTGATCTTAATTTTGTCTTTCGCCTTGAGCAGTCTTGGTTTCAAGAGCTTATATGGCAACTTGAAAGGGACTGTGAGTTCTTGGAAGCAGAGGGAATCATGGATTATAGTCTTCTGATTGGCCTGCATTTTCGTGATGATTCCTCTAGTGATGAAATGAACGGTTCACCACGGGATTCCGATTCAggtatttgtattattttctag 1833 0.5134 MQETLLTLPLSPEDIHIRAKKKKPQQHHHKAGNENNNNSSHPTRVSRRVSPAVSPASSGGEKSLPNGDIYSGALSGNAPHGTGKYLWSDGCMYEGEWRKGKACGKGRFSWPSGATYEGEFKSGRIDGFGSFIGVDGDMYRGSWVADRKHGFGEKRYGNGDVYAGWWKCNLQEGEGRYTWRNGNEYVGEWKSGVISGKGVLVWANGNRYEGYWENGVPVGKGVFTWCDGSTCAGNWGKEFVEEARVEKVKRCSVDGCKSVSFPRICIWELDGEAGDITCDIVHNAEASMFYRDGTSESENGGDDNGNGVLQKSPCWSLDGSAGEVKKPGQTVSRGHKNYDLILNLQLGIRYTVAKHASIVRELRPGDFDPKEKFWTRFPLEGSKFTPQHQSVDFRWKDYCPMVFRHLRELFAIDPADYMLAICGSDTLREMSSPGKSGSIFYLTQDDRFIIKTVKKSEVKVLIRMLPSYYQHVCQYKNSLVTAFLGVHCVKPVGGQKTRFIVMGNMFCSEYRIHKRFDLKGSSHGRTTDKPREEIDETTTLKDLDLNFVFRLEQSWFQELIWQLERDCEFLEAEGIMDYSLLIGLHFRDDSSSDEMNGSPRDSDSGICIIF 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2921 610 Pfam MORN repeat 208 230 IPR003409 -
Ssu5g2921 610 Pfam MORN repeat 162 183 IPR003409 -
Ssu5g2921 610 Pfam MORN repeat 139 161 IPR003409 -
Ssu5g2921 610 Pfam MORN repeat 70 92 IPR003409 -
Ssu5g2921 610 Pfam MORN repeat 116 138 IPR003409 -
Ssu5g2921 610 Pfam MORN repeat 93 114 IPR003409 -
Ssu5g2921 610 Pfam MORN repeat 185 207 IPR003409 -
Ssu5g2921 610 PANTHER PHOSPHATIDYLINOSITOL 4-PHOSPHATE 5-KINASE 37 606 - -
Ssu5g2921 610 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 65 185 - -
Ssu5g2921 610 MobiDBLite consensus disorder prediction 31 61 - -
Ssu5g2921 610 Gene3D - 100 148 - -
Ssu5g2921 610 Gene3D - 58 99 - -
Ssu5g2921 610 Gene3D - 187 258 - -
Ssu5g2921 610 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 332 610 IPR002498 GO:0016307|GO:0046488
Ssu5g2921 610 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 323 504 IPR027484 -
Ssu5g2921 610 MobiDBLite consensus disorder prediction 18 66 - -
Ssu5g2921 610 Gene3D - 505 605 - -
Ssu5g2921 610 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 37 606 IPR023610 -
Ssu5g2921 610 CDD PIPKc_AtPIP5K_like 337 595 - -
Ssu5g2921 610 SUPERFAMILY SAICAR synthase-like 334 598 - -
Ssu5g2921 610 SMART PIPK_2 363 610 IPR002498 GO:0016307|GO:0046488
Ssu5g2921 610 SMART morn 160 181 IPR003409 -
Ssu5g2921 610 SMART morn 114 135 IPR003409 -
Ssu5g2921 610 SMART morn 91 112 IPR003409 -
Ssu5g2921 610 SMART morn 206 227 IPR003409 -
Ssu5g2921 610 SMART morn 183 204 IPR003409 -
Ssu5g2921 610 SMART morn 137 158 IPR003409 -
Ssu5g2921 610 SMART morn 68 89 IPR003409 -
Ssu5g2921 610 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 422 600 IPR002498 GO:0016307|GO:0046488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2921 Ssu-Chr5 75857648 75860002 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2921 45 599 Acyl Lipid Metabolism Gene Families AT1G21980 70.000 0.0 828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2921 K00889 - gmx:100789188 1167.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2921 5 75857648 75860002 Ssu1g2491 1 68847280 68851026 PCT