Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2912 ATGGGGGGTCTTTGTTCAAAGTCTGTCAAAGGTGACAAGGTGTTTGCCAAAGCAGATGGACATTCTGATAACCATAAATCTGATGGTAAGAACCACAAGTCCGCCACCATGCCTAGTGATTTGACAAGTGCAGGGGATGGAGGTGACAAGAAAAAGCGAGAAGGTGCTGCTGCTGCAGGGACTGGTTCTGATGATTTCTATGACGGAATCCCACGGTTCACTGATTCTTTTCCACACAAGTCTAGGTCTGTAAGATCAACGCAGGCTGCTGTGGCAAAGGTCTCAGAGGTGAGTTTTCGCCTGGGCAGAGCTGGTACTATTGGATTTGGGAAGGCAGTTGATGTTTTGGACACTCTTGGGAGCAGCATGACAAATTTAAGTGGCGGCGGGTTCATGTCTGGAACTGTGACAAAGGGGAATGAAATTGGTATTTTAGCATTTGAGGTTGCGAACACTATTGTCAAGGGTTTTAGTCTTATGGAATCTCTTTCGACAAAAAGTATTAAGCATTTAAAAGAAGAGGTGCTTCCATTGGAGGCTGTGCAAGATTTAGTATCAAAGGATATGGATGAACTTCTAAGGATTGTTGCTGCAGACAAGAGGGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTCGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAAATGAGCAGAGAACTTAATTCTCCAAGACAATCAAAGGAGGAGGCAGAATTATTAATGCAACAATTGATGACTTTGGTTCAGTTTACTGCTGAATTATACCATGAGTTACATGCTTTGGATAGATTTGCACAAGATTATCAGCATAAGCGTGAAGAGGAGGATAATTCAGGTGCAGCTCAAAGTGGTGATGGCCTCTCAATCTTAAGGGCAGAACTTAAAAGTCAAAAGAAGCAGGttaaacatttgaaaaaaaagtcaCTCTGGTCCAGAACTTTGGAGGAGGTTATGGAGAAGCTTGTAGATATAGTCCATCTTTTGCATTTGGAGATAAACAACATCTTTGTCACTGCAGATGACCATAAACCATCAATTCGAACCATCAGCAATCGCCAAAGATTGGGTCCTGCAGGCCTTGCTTTGCATTATGCTAATATAGTGCTCCAAATTGATACTCTTGTTGCCAGATACAGTTCTATGCCTGCAAATACAAGGGATGCATTGTATCAGAGTTTGCCTCCTAATATAAAATCAGCTTTGCGTTCCAAATTACCAAGCTTTCATGTTATAAAAGAGCTCACCATATCAGATATTAAACAAGAGATGGAGAAAACATTGCATTGGCTGGTTCCGATTGCTACAAACACAGCCAAAGCACATCATGGTTTTGGTTGGGTAGGGGAGTGGGCAAACACTGGGTCTGAGATGAATAAGAAGACAATGAAGACTGATGTGATGAGAATTGAAACACTTCATCATGCCGATAAAGACAAAgtagaaaattatattcttgAACTTCTCCTATGGCTTCATCGCTTGGCCATCAAAAGTAAAGCCGCCATTGACACTGGAGAAATGAGGTCTACCTTAAAGTCCAATGTTGGCACTGCCCTGCAAATGACAAATCAACAATATACAAATGCCTCACCGCCATTGTTAACAGCTGACGAGCAGAAAATGCTGCATGATGTTGGTAATAAAATTCGTATAAGAGGGATCAGTAAAAGCTTGGACTTTGACAGTGTGAAGATTGGATTGACAGATAACGGCAGACTTACTAAAAGTAGCAGTTATTCATCAATAAGTAGAAGCAAGgaattatcttttaatagaattttgtCTAAGCTTCCTGTGATTGATTTTGGCATTGACAAAAAGAGAGCACTGGATGTGATTGACAGACTAGATGTGGCCAGATAA 1893 0.4041 MGGLCSKSVKGDKVFAKADGHSDNHKSDGKNHKSATMPSDLTSAGDGGDKKKREGAAAAGTGSDDFYDGIPRFTDSFPHKSRSVRSTQAAVAKVSEVSFRLGRAGTIGFGKAVDVLDTLGSSMTNLSGGGFMSGTVTKGNEIGILAFEVANTIVKGFSLMESLSTKSIKHLKEEVLPLEAVQDLVSKDMDELLRIVAADKRDELKVFSDEVIRFGNRSKDPQWHNLDRYFEKMSRELNSPRQSKEEAELLMQQLMTLVQFTAELYHELHALDRFAQDYQHKREEEDNSGAAQSGDGLSILRAELKSQKKQVKHLKKKSLWSRTLEEVMEKLVDIVHLLHLEINNIFVTADDHKPSIRTISNRQRLGPAGLALHYANIVLQIDTLVARYSSMPANTRDALYQSLPPNIKSALRSKLPSFHVIKELTISDIKQEMEKTLHWLVPIATNTAKAHHGFGWVGEWANTGSEMNKKTMKTDVMRIETLHHADKDKVENYILELLLWLHRLAIKSKAAIDTGEMRSTLKSNVGTALQMTNQQYTNASPPLLTADEQKMLHDVGNKIRIRGISKSLDFDSVKIGLTDNGRLTKSSSYSSISRSKELSFNRILSKLPVIDFGIDKKRALDVIDRLDVAR 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2912 630 Pfam Domain of unknown function (DUF3475) 144 200 IPR021864 GO:0045927
Ssu5g2912 630 MobiDBLite consensus disorder prediction 15 33 - -
Ssu5g2912 630 PANTHER DUF668 FAMILY PROTEIN 2 630 - -
Ssu5g2912 630 PANTHER OS01G0873900 PROTEIN 2 630 IPR045021 GO:0045927
Ssu5g2912 630 Coils Coil 297 317 - -
Ssu5g2912 630 Pfam Protein of unknown function (DUF668) 364 449 IPR007700 GO:0045927
Ssu5g2912 630 MobiDBLite consensus disorder prediction 15 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2912 Ssu-Chr5 75755459 75762694 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2912 - - gmx:100804075 1060.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2912 5 75755459 75762694 Ssu1g2493 1 68881822 68889248 PCT