Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2493 ATGGCAGGGGGTTCAAATTCAAAGAAGCCTATCAGTAGGGGCACTGATTCCACAAACTCAGTCGACATAATTGAAGGGAATAATGTACAAGTGCAAGTGCAAGAACAAGCTACAGTTATGGACCAACGTTTCTACGATGGAATCCCATGCTTTGCCGATGTTTGCTTTCTCCACAAGTCTAGGTCAATCCCAAAGGTCATGGAGGTGAGTTTACTCTTGGGCAGAGCTGGTACTATTGGATGTGGAACGGTTTTGGACACTATTGGGAGCAGCATTACGAATTTAAATGCCGGCAGTGGGATTAGTAGAGAATTAAATGCTCAAAGACTGTCAAGAGACGAGCCAGAATCAATAATGCAACAATTGATGACTTTGGTTCAGTTTACATTTGAATTGTACCATCAATTAGATGCTTGGGATAAATTTCAACAAGATTTTCAGCATAAGTGTGAGGAGGAGGATCAAGGAGATGGCCACAAACCATTAATTGGACACATGAGCAATTACCAAAGATTGGGCCCTGCAGGCCTCGCTTTGCATTATGCAAATATAGTGCTTCAAATTGATACTCTTGTAGCCAAATCCACTATGCCTACAAATACAAAGGATGCCTTATATCAAAGCTTGCctcctaatataaaattagctCTGCGTTCCAAATTACCATCCCTCCGTGTTGTAGAAGAGCTAACTGTAGCCGATATCACAGATGAGATGGAGAAAACATTACATTGGTTGGTCCCCATGGCCACTAAAACATCCAAAGCACATCGTAGATATGGTTGGGTAGGGGAGTGGGCAAACACTGGGTCTGAGGTAAACAGGAAGACTGGTGTGATGCGGATTGAGACATTCCACCATGCAGATAAAGACAAAGtggaatattatatttttgaacttCTCTTGTGGCTTCATCGCTTGGCCATCAGAAGTAAGGCTGACAGTGATACTGGCTAA 957 0.4148 MAGGSNSKKPISRGTDSTNSVDIIEGNNVQVQVQEQATVMDQRFYDGIPCFADVCFLHKSRSIPKVMEVSLLLGRAGTIGCGTVLDTIGSSITNLNAGSGISRELNAQRLSRDEPESIMQQLMTLVQFTFELYHQLDAWDKFQQDFQHKCEEEDQGDGHKPLIGHMSNYQRLGPAGLALHYANIVLQIDTLVAKSTMPTNTKDALYQSLPPNIKLALRSKLPSLRVVEELTVADITDEMEKTLHWLVPMATKTSKAHRRYGWVGEWANTGSEVNRKTGVMRIETFHHADKDKVEYYIFELLLWLHRLAIRSKADSDTG 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2493 318 Pfam Protein of unknown function (DUF668) 171 254 IPR007700 GO:0045927
Ssu1g2493 318 PANTHER OS01G0873900 PROTEIN 156 318 IPR045021 GO:0045927
Ssu1g2493 318 PANTHER DUF668 FAMILY PROTEIN 156 318 - -
Ssu1g2493 318 PANTHER DUF668 FAMILY PROTEIN 31 102 - -
Ssu1g2493 318 PANTHER OS01G0873900 PROTEIN 31 102 IPR045021 GO:0045927
Ssu1g2493 318 PANTHER OS01G0873900 PROTEIN 101 156 IPR045021 GO:0045927
Ssu1g2493 318 PANTHER DUF668 FAMILY PROTEIN 101 156 - -
Ssu1g2493 318 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2493 Ssu-Chr1 68881822 68889248 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2493 - - gmx:100780146 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2912 5 75755459 75762694 Ssu1g2493 1 68881822 68889248 PCT