Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2863 ATGGATTCGAGCTCGGGGCATCAAGAATTCGATTATTTGTTCAAGTTGTTGATGATTGGAGACTCTGGGGTTGGCAAGAGTAGTCTTCTTCTCAGTTTCACCTCCGATGCTTTTGAAGATCTCTCCCCCACTATTGGTGTTGATTTTAAGGTCAAATATGTGATGATGGGGGGTAAAAAGCTTAAGCTTGCAATTTGGGATACTGCTGGTCAGGAGAGATTCAGAACACTGACTAGTTCTTACTACCGAGGGGCGCAAGGAATCATCATGGTTTATGATGTAACCCGGCGAGACACATTTACAAATCTTTCTGAAATTTGGGCAAAGGAAATAGACCTTTATTCAACAAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTAGATAAGGAGGGTGATAGAGTTGTGACAAAGAAAGAGGGAATAGACTTTGCCAGGGAATATGGTTGCCTATTTATTGAATGCAGTGCTAAAACTCGAGTTAACGTTCAGCAATGCTTTGAAGAGCTTGTTTTGAAGATTCTGGATACACCTAGCCTCTTAGCCGAGGGCTCAAAGGGTGtaaaaaagaacatttttaagGACAGGCCACCCCAGTCTGATGCATCCACAAGTAGTTGTTGCTGA 630 0.4143 MDSSSGHQEFDYLFKLLMIGDSGVGKSSLLLSFTSDAFEDLSPTIGVDFKVKYVMMGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEIWAKEIDLYSTNQDCIKMLVGNKVDKEGDRVVTKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGVKKNIFKDRPPQSDASTSSCC 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2863 209 ProSiteProfiles small GTPase Ras family profile. 9 209 IPR001806 GO:0003924|GO:0005525
Ssu5g2863 209 PANTHER SMALL MONOMERIC GTPASE-RELATED 1 209 - -
Ssu5g2863 209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 182 IPR027417 -
Ssu5g2863 209 SMART rho_sub_3 16 178 IPR001806 GO:0003924|GO:0005525
Ssu5g2863 209 PANTHER DRAB5-RELATED 1 209 - -
Ssu5g2863 209 Gene3D - 7 209 IPR027417 -
Ssu5g2863 209 ProSiteProfiles small GTPase Rho family profile. 7 176 - -
Ssu5g2863 209 TIGRFAM small_GTP: small GTP-binding protein domain 12 170 IPR005225 GO:0005525
Ssu5g2863 209 ProSiteProfiles small GTPase Rab1 family profile. 9 209 - -
Ssu5g2863 209 SMART ran_sub_2 19 204 - -
Ssu5g2863 209 SMART rab_sub_5 14 178 - -
Ssu5g2863 209 SMART ras_sub_4 11 178 - -
Ssu5g2863 209 PRINTS Transforming protein P21 ras signature 36 52 - -
Ssu5g2863 209 PRINTS Transforming protein P21 ras signature 54 76 - -
Ssu5g2863 209 PRINTS Transforming protein P21 ras signature 14 35 - -
Ssu5g2863 209 PRINTS Transforming protein P21 ras signature 118 131 - -
Ssu5g2863 209 PRINTS Transforming protein P21 ras signature 153 175 - -
Ssu5g2863 209 SMART arf_sub_2 1 179 - -
Ssu5g2863 209 CDD Rab18 14 175 - -
Ssu5g2863 209 Pfam Ras family 15 176 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2863 Ssu-Chr5 75010456 75013654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2863 15 168 EF-hand Containing Proteins AT5G27540 25.625 4.59e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2863 K07910 - gmx:100526880 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2863 5 75010456 75013654 Ssu1g2554 1 70085342 70091133 PCT