Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu1g2554 | ATGGATTCGAGTTCGAGCCAGGAGTTCGATTATTTGTTTAAGTTGTTGATGATTGGGGACTCAGGTGTTGGCAAGAGTAGTCTCCTCCTCTGTTTCACCTCTGATTCCTTTGAAGATCTCTCTCCCACAATTgGGGTTGATTTTAAGGTCAAATATTTGATGATGGAAGGTAAAAAGCTGAAGCTTGCCATTTGGGATACAGCTGGTCAAGAGAGATTCAGGACATTGACGAGTTCTTACTACCGAGGTGCACAAGGGATCATCATGGTTTATGATGTAACTCGGCGTGAAACGTTTACGAATCTCTCTGAAGTGTGGGCAAAGGAAATAGACCTTTATTCAACAAATCCGGAATGCATCAAGATGCTTGTTGGAAACAAAGTGGATAAGGAGGGTGAAAGAGTTGTGACAAAGAAAGAGGGAATAGACTTTGCCAGGGAATGTGGTTGCCTATTTATTGAATGCAGTGCTAAAACTCGAGTTAACGTACAACAATGCTTTGAAGAGCTTGTTCTGAAGATTCTGGATATACCTAGCCTCGTAGCCGAGGGCTCTAAAGGCGTtaaaaagaacatttttaagGACAAGCCATCCCAGTCTCATGCCACAACTAGTTGTTGCTGA | 624 | 0.4183 | MDSSSSQEFDYLFKLLMIGDSGVGKSSLLLCFTSDSFEDLSPTIGVDFKVKYLMMEGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNPECIKMLVGNKVDKEGERVVTKKEGIDFARECGCLFIECSAKTRVNVQQCFEELVLKILDIPSLVAEGSKGVKKNIFKDKPSQSHATTSCC | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu1g2554 | 207 | ProSiteProfiles | small GTPase Rho family profile. | 6 | 175 | - | - | |
| Ssu1g2554 | 207 | TIGRFAM | small_GTP: small GTP-binding protein domain | 11 | 169 | IPR005225 | GO:0005525 | |
| Ssu1g2554 | 207 | PANTHER | DRAB5-RELATED | 1 | 207 | - | - | |
| Ssu1g2554 | 207 | SMART | arf_sub_2 | 1 | 178 | - | - | |
| Ssu1g2554 | 207 | ProSiteProfiles | small GTPase Rab1 family profile. | 8 | 207 | - | - | |
| Ssu1g2554 | 207 | Pfam | Ras family | 14 | 175 | IPR001806 | GO:0003924|GO:0005525 | |
| Ssu1g2554 | 207 | SMART | rab_sub_5 | 13 | 177 | - | - | |
| Ssu1g2554 | 207 | PRINTS | Transforming protein P21 ras signature | 13 | 34 | - | - | |
| Ssu1g2554 | 207 | PRINTS | Transforming protein P21 ras signature | 117 | 130 | - | - | |
| Ssu1g2554 | 207 | PRINTS | Transforming protein P21 ras signature | 35 | 51 | - | - | |
| Ssu1g2554 | 207 | PRINTS | Transforming protein P21 ras signature | 53 | 75 | - | - | |
| Ssu1g2554 | 207 | PRINTS | Transforming protein P21 ras signature | 152 | 174 | - | - | |
| Ssu1g2554 | 207 | PANTHER | SMALL GTPASE FAMILY RAB PROTEIN | 1 | 207 | - | - | |
| Ssu1g2554 | 207 | SMART | ran_sub_2 | 18 | 203 | - | - | |
| Ssu1g2554 | 207 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 8 | 179 | IPR027417 | - | |
| Ssu1g2554 | 207 | ProSiteProfiles | small GTPase Ras family profile. | 4 | 207 | IPR001806 | GO:0003924|GO:0005525 | |
| Ssu1g2554 | 207 | CDD | Rab18 | 13 | 174 | - | - | |
| Ssu1g2554 | 207 | SMART | ras_sub_4 | 10 | 177 | - | - | |
| Ssu1g2554 | 207 | Gene3D | - | 5 | 207 | IPR027417 | - | |
| Ssu1g2554 | 207 | SMART | rho_sub_3 | 15 | 177 | IPR001806 | GO:0003924|GO:0005525 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu1g2554 | Ssu-Chr1 | 70085342 | 70091133 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu1g2554 | 14 | 167 | EF-hand Containing Proteins | AT5G27540 | 26.250 | 2.10e-10 | 57.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu1g2554 | K07910 | - | gmx:100779729 | 397.512 |
Event-related genes