Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2857 ATGGTGAGGTTTTTAGGGTTGACTCTTGGTTATGCAGAAGAACCCCGGGAAATAGCATCGAGGTCGAACCTGACCAGTGAGTCTGGTGAAAATGGATGGCTCATCAGGTTCTTTGACTCAGCGTTCTTCTGCGAGTGGATTGCTGTTAGCTACTTGTACAAGCATGATCATGCCGGGGTGCGTGATTATCTCTGTAATAGAATGTATACTCTTCCTTTGCAAGGTGTTGAGAGTTATTTGTTCCAGATATGTTACATGATGATACACAAGCCTAGTCCGTCCTTGGATAAATATGTGATAGATATGTGCTCAAAGTCGCTTAAGATTGCTTTGAAGGTACATTGGTTCTTGTTGGCGGAGCTTGAGGACTCTGATGATAATGAAGGGATTAGTAGGATTCAGGAGAAGTGTCAGATTGCTGCCACCTTGATGGGTGAGTGGCCACCTCTAATACGGCCTCAAACTGAACCTCCGAGTCCTGGAGGCAAGAGCCAAGTTTTGAATAGGTTACTGTCATCGAAGAATCGCTTGTTGTCATTAACATTGTCGCCGCCTACTCAGAAGTCTTTATCGTTTTCACCTTCCTCAGGAAACAATTTGCAAGAGGATGGCAACCCGCTGTCTCCGGATGAGAACAAGATGTTTAAGAAGTTTATGCCAGGTCTGAAGGTTAGAGATGCTTTGCTATTTCGGAAGTCAGTGGACAAAGATGATGATGGTTCTGAAAAGGATGGTTTTTTCAAGAGGCTTTTGAGAGATAGCAAAGGTGATGATGAACTGGGCCAAAAATTTCGTGATGCATTTCTATTTAGGAAGTCATCTGTGAAAGATGATGAAGACTCTGAAaaagataatttctttaaaaggtTCTTAAGGGACAGTAGAGGTGACGATGAAGACTCGGAAAAGGATGGTTTCTTTCGAAGGCTCTTAAGGGACAGTAGAAGCGAAGATGAAGATGTAGCTTCAAGTTCAGAGGGATTATTTAAGAGGTTGTTTCGTGATAGCAAGAATGATTCTGAGGACAGAACACACACTAAAACAATAGAAGATGAAGATAAAGAGGGATTTTTCCGAAAGTTTTTCCGGGAGAAATTTGAAGATAGGAAGGATGAGAGTGATAGGAATGATAACAGAGATGTTGCtaattttgaagagaaatatGCTAAACCTGCTGAAGAGGATGAAAAAGAAGGGTTTTTTCGGAAATACTTCAAGGATAAAGTTGAGGACAAGAAAGatacaaatgataaaattgaaGAGGGCACTACCAATGGTGAGGAGGAAGATTCTTCTGAGTTTTCCCTGTTCAAAAGACTATTTCGTGTGCACCCTGAAGATGCTAAAAGTAGTCTAGCTGATGAAAGCAACAATAATGGTGGCTTATTTGAAAGTAGTCCAGGTACCGAAAATTTTTTCCGTAAATTGTTCAGAGACTGTGACCGTTCAATTGAAGATTCAGAGCTATTGGGTCCAAAAAGACAGAAAGAGAAGCACCCTGGATCCCCAAAGCAGCAAAGTGAAAAATCGAGCACAAAGCCACCATTACCAATTAGTCCACCTCAGTTCCGGAAAGGGGCTTACCATGATTCATTGGAGTTTGTGCAGTCATTATGTGATACATCATATGGGTTAGTGGATGTATTTCCAATTGAAGATCGCAAAAGTGCTCTTCGTGAGGCGCTTGTAGAAATCAATCTACATGTAGCAGAGGCTCAGAACACTGGAGGAGTTTGTTTTCCATTGGGAAAGGGCATGTATCGTGTGCTTAATATACCTGAAGATGAAGCTGTTCTCTTGAATTCTAGGGAGAAGGCACCTTACCTGATCTGTGTAGAAGTTTTGAGATGTGAAATGCCAAGTAATTCCAAGGAGGCATCCAGTTCTCAGAAACTTTCTCAAGGGGGAATCCCTTTGGCAAATGGAGATGCTCTCTTGCAAAAACCACCCCCTTGGGCTTATCCATTACGGACAGCACAAGAGGTGTACCGCAATAGCAATGATAGGATGTCCAGTTCAACTGCTCACGCAATTGACCAGGCCATGACTCATGTATCTGagtcaaaaatcaaatttgttagTGTGAATCTTTCCGTGGAAACACAGTTAAATGGTCAGCCAGATAAGATTGAAGTGGCTGATCTACATGGGGGCAGTCAGCGTTCTGCTTCAAGTTATAGAGAGGGCGTGTATGAAGCGGCAGCAGCAGGATGCGGTAGTGATTTGGAATGGGTACAAGTAGTTTTGACAGCTGATCCTGGGGTTAGATTGGAAGATATTGAGGATCAAGCACCACCTCGGAGGAAGGAACATCGCCGTGTTCCAAGTATGGTGGCAATAGAGGAAGTAAAGGCTGCGGCAGCAAAAGGGGAAGCACCTCTTGGACTCCCTTTGAAAGGTGCTGGTCAAGATTCATCAGATGCACAACTAAGGGCGAATGGATTTACTCCCAAAGCCAGTGATGCCTTGTCTGGTGAACTTTGGGAGACAAAGAAGGATAGGATATGCAAGGCTTCCATATATGGGAAGTTACCTGGTTGGGACTTGCGATCTGTTATTGTAAAGAGTGGTGATGATTGCAGGCAAGAGCATCTGGCTGTTCAACTTATTTCTCACTTCTATGATATTTTCCAAGAAGCTGGTCTACCCCTCTGGCTGCGCCCGTATGAAGTTTTGTGTACTTCTTCTTATACAGCTCTTATTGAAACAATTCCAGATACGGCTTCTCTACACTCTATCAAAAGTAGATATCCCAACATCTCAAGTTTACGTGAATTCTTCAATGCTAAGTATCAAGAAAATTCTCCCAGTTTTAAACTTGCCCAGAGAAACTTTGTTGAAAGTATGGCAGGATATTCCCTGGTCTGCTACTTTCTGCAGGTGAAGGACAGGCATAATGGGAACCTCCTATTGGATGAAGAAGGTCATATCATACATATTGATTTTGGTTTCATGCTTTCCAATTCACCTGGTGGTGTTAACTTTGAAAGTGCACCTTTCAAATTAACACGCGAGCTTCTTGAGGTTATGGATTCTGATGCTGAGGGTGTTCCAAGCGAgttctttgattattttaagGTTTTATGCATTCAAGGCTTCCTTACTTGCCGCAAGCATGCTGAGCGCATCATTCTTCTTGTTGAGATGTTGCAGGATTCAGGTTTCCCATGCTTTAAAGGTGGTGCTCGGACAATACAGAACCTACGAAAGCGATTCCATCTCAGTCTAACAGAAGAGCAATGTGTCTCCTTGGTGCTTTCACTCATTAGCAGTAGCCTGGATGCTTGGAGGACACGGCAGTATGATTATTATCAGAGGGTTTTGAATGGAATATTGTGA 3339 0.4205 MVRFLGLTLGYAEEPREIASRSNLTSESGENGWLIRFFDSAFFCEWIAVSYLYKHDHAGVRDYLCNRMYTLPLQGVESYLFQICYMMIHKPSPSLDKYVIDMCSKSLKIALKVHWFLLAELEDSDDNEGISRIQEKCQIAATLMGEWPPLIRPQTEPPSPGGKSQVLNRLLSSKNRLLSLTLSPPTQKSLSFSPSSGNNLQEDGNPLSPDENKMFKKFMPGLKVRDALLFRKSVDKDDDGSEKDGFFKRLLRDSKGDDELGQKFRDAFLFRKSSVKDDEDSEKDNFFKRFLRDSRGDDEDSEKDGFFRRLLRDSRSEDEDVASSSEGLFKRLFRDSKNDSEDRTHTKTIEDEDKEGFFRKFFREKFEDRKDESDRNDNRDVANFEEKYAKPAEEDEKEGFFRKYFKDKVEDKKDTNDKIEEGTTNGEEEDSSEFSLFKRLFRVHPEDAKSSLADESNNNGGLFESSPGTENFFRKLFRDCDRSIEDSELLGPKRQKEKHPGSPKQQSEKSSTKPPLPISPPQFRKGAYHDSLEFVQSLCDTSYGLVDVFPIEDRKSALREALVEINLHVAEAQNTGGVCFPLGKGMYRVLNIPEDEAVLLNSREKAPYLICVEVLRCEMPSNSKEASSSQKLSQGGIPLANGDALLQKPPPWAYPLRTAQEVYRNSNDRMSSSTAHAIDQAMTHVSESKIKFVSVNLSVETQLNGQPDKIEVADLHGGSQRSASSYREGVYEAAAAGCGSDLEWVQVVLTADPGVRLEDIEDQAPPRRKEHRRVPSMVAIEEVKAAAAKGEAPLGLPLKGAGQDSSDAQLRANGFTPKASDALSGELWETKKDRICKASIYGKLPGWDLRSVIVKSGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLCTSSYTALIETIPDTASLHSIKSRYPNISSLREFFNAKYQENSPSFKLAQRNFVESMAGYSLVCYFLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPGGVNFESAPFKLTRELLEVMDSDAEGVPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGGARTIQNLRKRFHLSLTEEQCVSLVLSLISSSLDAWRTRQYDYYQRVLNGIL 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2857 1112 ProSiteProfiles PIK helical domain profile. 1 140 IPR001263 -
Ssu5g2857 1112 MobiDBLite consensus disorder prediction 184 214 - -
Ssu5g2857 1112 SUPERFAMILY Protein kinase-like (PK-like) 558 1105 IPR011009 -
Ssu5g2857 1112 PANTHER PHOSPHATIDYLINOSITOL KINASE 11 258 IPR015433 GO:0046854|GO:0048015
Ssu5g2857 1112 PANTHER PHOSPHATIDYLINOSITOL KINASE 324 1112 IPR015433 GO:0046854|GO:0048015
Ssu5g2857 1112 MobiDBLite consensus disorder prediction 487 504 - -
Ssu5g2857 1112 Gene3D - 909 1110 IPR036940 GO:0016301
Ssu5g2857 1112 MobiDBLite consensus disorder prediction 184 206 - -
Ssu5g2857 1112 SUPERFAMILY ARM repeat 54 126 IPR016024 -
Ssu5g2857 1112 MobiDBLite consensus disorder prediction 487 522 - -
Ssu5g2857 1112 PANTHER PHOSPHATIDYLINOSITOL KINASE 262 331 IPR015433 GO:0046854|GO:0048015
Ssu5g2857 1112 CDD PI4Kc_III_beta 820 1112 - -
Ssu5g2857 1112 MobiDBLite consensus disorder prediction 411 431 - -
Ssu5g2857 1112 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 829 1097 IPR000403 -
Ssu5g2857 1112 MobiDBLite consensus disorder prediction 368 396 - -
Ssu5g2857 1112 Gene3D - 741 904 - -
Ssu5g2857 1112 Pfam Phosphatidylinositol 3- and 4-kinase 851 1058 IPR000403 -
Ssu5g2857 1112 SMART pi3k_hr1_6 851 1110 IPR000403 -
Ssu5g2857 1112 PANTHER BNAA02G34040D PROTEIN 262 331 - -
Ssu5g2857 1112 PANTHER BNAA02G34040D PROTEIN 11 258 - -
Ssu5g2857 1112 PANTHER BNAA02G34040D PROTEIN 324 1112 - -
Ssu5g2857 1112 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 1. 854 868 IPR018936 GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2857 Ssu-Chr5 74878301 74892342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2857 1 1111 Lipid Metabolism Gene Families AT5G09350 70.000 0.0 1558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2857 K19801 - gmx:100778394 2043.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2857 5 74878301 74892342 Ssu5g2857 5 74878301 74892342 ECH
Ssu5g2857 5 74878301 74892342 Ssu1g2567 1 70267562 70278768 PCT