Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2848 ATGCTAGCAGCTGCTAGGCTTGCAACCTCTTTCAAAGGCAATTACCCCGTATATGTGCTTTTTGTTACCAACTTCTTTCCAGTACCTAATTTGTTTACCTGCAAAGAACTTGTGGGACATGAAGGAATGAAGCCATGGTTGTGCTTCCGGGACTATGATTGTAACTGGAATTCTGACATCTTTCACGAGTTTGCAAGTGATGTTGCTCATGAAAGGTGGTGGAAGGTGCATGATGCAATGCCTGAGCTTTTGCAACAGTTTTGTATATTGAAGTCAAAGCAGAAGGCACAGTTGGAATGGGATCGTAGGCAAGCTGAAATTGCAAACTACACAGATAGGCATTGGCGAATTGAAGTTAAAGATAAGAGGTTGAAAAAATGCATAGATAATTTGTGCTCATGGGAAAATATGTTGAAGCATTGGGGAGAGTCCAATTGGACAGATGATGAGTCTTATACTCCAACACCACCTGCCATTACCACATCATCTCTTTCTGGTTTGTGA 504 0.4167 MLAAARLATSFKGNYPVYVLFVTNFFPVPNLFTCKELVGHEGMKPWLCFRDYDCNWNSDIFHEFASDVAHERWWKVHDAMPELLQQFCILKSKQKAQLEWDRRQAEIANYTDRHWRIEVKDKRLKKCIDNLCSWENMLKHWGESNWTDDESYTPTPPAITTSSLSGL 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2848 167 PANTHER UDP-GLUCURONATE:XYLAN ALPHA-GLUCURONOSYLTRANSFERASE 3-RELATED 2 42 IPR030519 GO:0005794|GO:0009834|GO:0015020|GO:0045492
Ssu5g2848 167 PANTHER UDP-GLUCURONATE:XYLAN ALPHA-GLUCURONOSYLTRANSFERASE 3-RELATED 42 149 IPR030519 GO:0005794|GO:0009834|GO:0015020|GO:0045492
Ssu5g2848 167 MobiDBLite consensus disorder prediction 147 167 - -
Ssu5g2848 167 PANTHER GLYCOGENIN SUBFAMILY MEMBER 2 42 - -
Ssu5g2848 167 PANTHER GLYCOGENIN SUBFAMILY MEMBER 42 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2848 Ssu-Chr5 74712737 74715153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2848 42 167 Glycosyltransferase AT3G18660 72.222 3.01e-64 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2848 K20890 - gmx:100783884 266.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2848 5 74712737 74715153 Ssu5g2848 5 74712737 74715153 ECH
Ssu5g2848 5 74712737 74715153 Ssu1g2580 1 70657126 70664476 PCT