Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2580 ATGAGAGGAACAATGGGTACTTCTCCTCACGCCGTTGAAGCTCGACACCGTTTGCCTGCATCCATtgAAGATTTATACAAACGAAGACTGCCAAGAAGCAAAGCGAAAGATGCAGAGAAGCCTTTCCACTTATCCGTCCAAGATAGGAGCTCAAGATGCAAGTTGTCTTTCTTAAAACTTATCCTATTAATAACCATATGCGGCACTTTTGTAACACTCCTGTACTCTCCAGAGGTTTACAATACCAACCATTTATCAAGCTCTGGCTCTCGGTGGATATGGGGTGGCTCAGATCCTCGTTACTTGTCTAGTGTAGACACTGACTGGGATGACATACTGAAAATTACGGAGAAGCTGGCAAGGAAAGATGAACTTCAAGGAATTGGGCTTGTAAATTTCAACAAGACTGAACTAGCCCATTGGGAGCATCTTATTCCTGATGCAACACATGTTGTTCTGCCTCTGGAGTATGCTGCAAAAAATGTGACATGGGAGTCCTTGTACCCAGAATGGATTGATGAGGAAGAAGAAACTGAAGTTCCTGTCTGTCCTTCTCTGCCAAGTCTTAGATCCCCTGGCATAAGACTTAACCTCATTGCTGTGAAGCTTCCTTGTTGGAATAGGGGGAATTGGTCTAGAGATGTTGCTCGTTTGCACCTGCAGCTTGCAGCTGCTGGCCTTGCAACCTCTTTCAAAGGCAACTACCCCGTTTATGTGCTCTTCATTACCAACTGTTTTCCAATACCAAATCTGTTTACATGTAAAGAACTAGCTGGACGTGAAGGGAATGTGTGGTTGTACAAACCAAACTTGAgtgttttgagagaaaaggtcCAGCTTCCAGTAGGGTCTTGTGAACTTGCACTTCCTATGAGAGGCAAAGGTGTGAAGCCATGGTTATGCTTCCGGGACTATGATTGTAACTGGAATGCTGATATCTTTCACGAATTTGCAAGCGATGTTGCACATGCAAAGTGGTGGAAGGTGCATGATGCAATGCCTGAGCTTTTGCAGCAGTTTTGCCTGTTGAAGTCAAAGCAGAAGGCCCAGTTGGAGTGGGATCGTAGCCAGGCTGAAATAGCAAACTACACGGACGGGCATTGGCGAATTAAAGTTAAAGATAGGCGCTTGAAGAAATGTATAGATAATTTGTGCAACTGGAAAAGTATGTTGCGGCACTGGGGAGAGACAAATTGGACAGATGACGAGTTTTATACTCTAACACCACCTTCCATTACCACAGCATCTCTTTCTGCTTTATGA 1263 0.4371 MRGTMGTSPHAVEARHRLPASIEDLYKRRLPRSKAKDAEKPFHLSVQDRSSRCKLSFLKLILLITICGTFVTLLYSPEVYNTNHLSSSGSRWIWGGSDPRYLSSVDTDWDDILKITEKLARKDELQGIGLVNFNKTELAHWEHLIPDATHVVLPLEYAAKNVTWESLYPEWIDEEEETEVPVCPSLPSLRSPGIRLNLIAVKLPCWNRGNWSRDVARLHLQLAAAGLATSFKGNYPVYVLFITNCFPIPNLFTCKELAGREGNVWLYKPNLSVLREKVQLPVGSCELALPMRGKGVKPWLCFRDYDCNWNADIFHEFASDVAHAKWWKVHDAMPELLQQFCLLKSKQKAQLEWDRSQAEIANYTDGHWRIKVKDRRLKKCIDNLCNWKSMLRHWGETNWTDDEFYTLTPPSITTASLSAL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2580 420 PANTHER GLYCOGENIN SUBFAMILY MEMBER 295 397 - -
Ssu1g2580 420 PANTHER GLYCOGENIN SUBFAMILY MEMBER 20 293 - -
Ssu1g2580 420 PANTHER UDP-GLUCURONATE:XYLAN ALPHA-GLUCURONOSYLTRANSFERASE 1 20 293 - -
Ssu1g2580 420 PANTHER UDP-GLUCURONATE:XYLAN ALPHA-GLUCURONOSYLTRANSFERASE 1 295 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2580 Ssu-Chr1 70657126 70664476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2580 275 420 Glycosyltransferase AT3G18660 63.699 3.59e-60 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2580 K20890 - gmx:100780439 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2848 5 74712737 74715153 Ssu1g2580 1 70657126 70664476 PCT