Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2804 ATGTCTTCTGCAACCAAGGGTGATAGGAAGACTGCAATTGATGTGGCTTCGTGGATGTTCAACATTGTCACATCTGTGGGGATAATCCTTGTGAATAAAGCCCTCATGGCTACATATGGTTTCAGCTTTGCTACAACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGCTGACAGTCATTCTTAAGTGGCTGGGATATATCCAAACCTCTCATCTTCCCTTACCTGATCTTATCAAATTTGTCTTATTTGCAAATTTCTCTATCGTTGGAATGAATGTGAGTTTGATGTGGAACTCCGTCGGTTTCTATCAGATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTGGACAATGTGCGATATTCAAGGGACACAAAGCTTAGCATTTCTCTAGTTCTCCTTGGCGTAGCTGTGTGTACAGTCACTGATGTGAGCGTCAATGCTAAGGGTTTCATAGCTGCTGCAGTGGCAGTTTGGAGCACCTCACTGCAGCAGTATTATGTGCATTTTCTCCAGAGGAAGTATTCTCTTGGATCGTTTAACTTGTTGGGCCACACTGCACCAGTACAGGCAGCAAGTTTACTGCTAGTAGGTCCCTTTGTGGATTATTGGCTGACAAACAAACGAGTTGATGCCTACAATTATGGTTTGATATCCACTTTGTTCATCATTGTGTCTTGCACTATCGCAGTAGGGACAAACCTCAGCCAGTTCATCTGCATTGGCAGGTTCACGGCTGTATCCTTCCAAGTCCTTGGCCACATGAAGACTATTCTGGTACTGGCTCTAGGATTCGTTTTCTTTGGAAAAGAAGGTCTCAATTTACAAGTAATTCTGGGCATGGTCATTGCAATCGCGGGAATGATATGGTATGGCAATGCATCTTCTAAGCCAGGAGGGAAGGAGCGTCATAGCTTACCCATTAATCTTACCCCCAAGACACAAGAGTATAATGTACTACCAGTATCCTCTCAAACGGATCAGGAAGTATAG 1011 0.4352 MSSATKGDRKTAIDVASWMFNIVTSVGIILVNKALMATYGFSFATTLTGLHFATTTLLTVILKWLGYIQTSHLPLPDLIKFVLFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVILDNVRYSRDTKLSISLVLLGVAVCTVTDVSVNAKGFIAAAVAVWSTSLQQYYVHFLQRKYSLGSFNLLGHTAPVQAASLLLVGPFVDYWLTNKRVDAYNYGLISTLFIIVSCTIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLALGFVFFGKEGLNLQVILGMVIAIAGMIWYGNASSKPGGKERHSLPINLTPKTQEYNVLPVSSQTDQEV 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2804 336 Pfam Triose-phosphate Transporter family 23 297 IPR004853 -
Ssu5g2804 336 PANTHER UDP-RHAMNOSE/UDP-GALACTOSE TRANSPORTER 4 7 314 - -
Ssu5g2804 336 PANTHER SOLUTE CARRIER FAMILY 35 7 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2804 Ssu-Chr5 74030206 74033681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2804 1 303 Organic Solute Cotransporters AT5G05820 26.032 1.94e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2804 - - gmx:100814890 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2804 5 74030206 74033681 Ssu1g2654 1 72120982 72124124 PCT