Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2349 ATGTCTGCTGCTGTGTCCACAACCAAGGATGTTCCCTTCAATGCTCATTTGGAGGAAGAGCTCAAATACAAAGGAACCAGCAAGATTGCTGGGGAAACAGACCAGCTTCCTTACAATGATGATGCTGAAGGAACTGAGTCAGAGGGAGAGGAAGACCCCAAGTTGGAATTATTGGATCTTGGCCCTCAGTTTTCCCTCAAGGAACAGCTTGAGAAAGATAAAGATGATGAAAGCTTGAGAAAATGGAAGGAAAAACTTCTGGGAAGTATTGATGTGTCTGCCGTTGGAGAGAACAAAGAGCCAGAAGTGAAGATAGTGAGCCTCACCATAATATGCCCAGGGAGGCCTGACCTCATCCTACCAATTCCATTTACTTCTGATGCTAAGAAAAGTATCTTCACCCTTAAGGAAGGAAGTCAATACCGCTTGAAATTCTCCTTCACTGTCTCCAACAACATTGTTTCTGGCCTCAAATACACCAATGTTGTTTGGAAAACTGGGGTTAGAGtgGACAACACAAAAAAATGTTGGGAACTTACAGCCCAAGACAGGAACCATATACATATGAATTGGAAGAAGAAACTACCCCTTCGGGGTTGTTTGCCAGGGGAACCTATTCAGCAAGGACCAagtttGTAG 639 0.4366 MSAAVSTTKDVPFNAHLEEELKYKGTSKIAGETDQLPYNDDAEGTESEGEEDPKLELLDLGPQFSLKEQLEKDKDDESLRKWKEKLLGSIDVSAVGENKEPEVKIVSLTIICPGRPDLILPIPFTSDAKKSIFTLKEGSQYRLKFSFTVSNNIVSGLKYTNVVWKTGVRVDNTKKCWELTAQDRNHIHMNWKKKLPLRGCLPGEPIQQGPSL 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2349 212 MobiDBLite consensus disorder prediction 22 54 - -
Ssu5g2349 212 Gene3D Coagulation Factor XIII, subunit A, domain 1 58 198 IPR024792 -
Ssu5g2349 212 MobiDBLite consensus disorder prediction 39 53 - -
Ssu5g2349 212 SUPERFAMILY E set domains 43 174 IPR014756 -
Ssu5g2349 212 Pfam RHO protein GDP dissociation inhibitor 46 175 IPR000406 GO:0005094|GO:0005737
Ssu5g2349 212 PANTHER RHO GDP-DISSOCIATION INHIBITOR 4 176 IPR000406 GO:0005094|GO:0005737
Ssu5g2349 212 PANTHER RHO PROTEIN GDP-DISSOCIATION INHIBITOR-RELATED 4 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2349 Ssu-Chr5 66236678 66238032 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2349 K12462 - gmx:100806852 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1836 9 55747222 55748661 Ssu5g2349 5 66236678 66238032 PCT