Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2342 ATGGCAGTTGAAACAAGAACTGGAGGTCTTTTCTTTGTTCCCCTTCTCGTATTTGAGTATCGCTTTTTTACATCGGAAGGTGTGATGGCGGCTGATTGGGGTCCAGTGGTGATATCAGTGGTGCTGTTTGTGCTATTAAGCCCTGGGTTGCTGTTTCAGCTTCCAGCCAGGGGCAAGGTGGTGGCCTTTGGGAGCATGCAAACTAGTGGCCTATCTATCTTAGTCCACACCATCATCTTCTTTGGACTCATCACCATCTTTGTACTTGCCATTGGTGTGCATATTTACTCTGGATAA 297 0.468 MAVETRTGGLFFVPLLVFEYRFFTSEGVMAADWGPVVISVVLFVLLSPGLLFQLPARGKVVAFGSMQTSGLSILVHTIIFFGLITIFVLAIGVHIYSG 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2342 98 Pfam Protein of unknown function (DUF3339) 31 96 IPR021775 -
Ssu5g2342 98 PANTHER OS05G0103400 PROTEIN 29 98 IPR021775 -
Ssu5g2342 98 PANTHER PROTEIN, PUTATIVE-RELATED 29 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2342 Ssu-Chr5 66087618 66090040 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2342 - - ccaj:109810730 132.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1831 9 55696259 55702754 Ssu5g2342 5 66087618 66090040 PCT