Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2331 ATGGAAGCAAAAAAGAGGGCGAAGAGCCGGTACCAAGTGCCGGAGAAACGGTGCGACAGCCCCACACCGATCCAGATCAAAGCAATACTCCACTACGCCACCTCGCAGGTTGTCCCAATACAGATCCTCTCCGAGATCACCGTCACTTCGGACGTCCTCAAATCCCTGAACCGCCCGTGCAACTTCCTCGTCCTTGGGCTGGGCTACGACTCCCTCATGTGGGCCAGCCTCAACCCACGCGGCACCACGCTGTTCCTCGAGGACAACCCCCAGTGGGTTGAGAAAGTCCGCAAGGACGCGCCGGAGCTCCGAGCCGCCGTCGTCCGGTACCGGACCCAGGCCCGCGAGGCCGACGAGCTGCTCTCGTGGTACCGCTCCGAGCCGGCGTGCTCCGCGGCGACCGCCACGCTGCGCGGCAACGAGCGGTGCAGGCTGGCGCTGCACGACCTCCCCGACGAGGTGTACGAGACGGAGTGGGACCTGGTGATGATCGACGCGCCCAAAGGGTACTTCCCGGAGGCGCCGGGACGCATGGCGCCGATTTACTCCGCCGCGGTGATGGCGAGGAATAGAAAGGGACCCGGCGTGACGCACGTGTTCCTGCACAATGTGGACCGGAAGATGGAGAAGGAATACTCGGAGGAGTTTCTCTGCATGAAGCACCTGGTCAACGGTGCTGGCAGGCTCTGGCACTTCGCCATTCCTCCCAAGGGCAATGACACTCGTCGTGACCACGCTCGGTTCTGTTAG 750 0.6333 MEAKKRAKSRYQVPEKRCDSPTPIQIKAILHYATSQVVPIQILSEITVTSDVLKSLNRPCNFLVLGLGYDSLMWASLNPRGTTLFLEDNPQWVEKVRKDAPELRAAVVRYRTQAREADELLSWYRSEPACSAATATLRGNERCRLALHDLPDEVYETEWDLVMIDAPKGYFPEAPGRMAPIYSAAVMARNRKGPGVTHVFLHNVDRKMEKEYSEEFLCMKHLVNGAGRLWHFAIPPKGNDTRRDHARFC 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2331 249 PANTHER OS11G0490100 PROTEIN 18 249 IPR006514 GO:0045492
Ssu5g2331 249 TIGRFAM A_thal_3515: uncharacterized plant-specific domain TIGR01627 26 249 IPR006514 GO:0045492
Ssu5g2331 249 Gene3D Vaccinia Virus protein VP39 44 245 IPR029063 -
Ssu5g2331 249 Pfam Polysaccharide biosynthesis 45 232 IPR021148 -
Ssu5g2331 249 PANTHER POLYSACCHARIDE BIOSYNTHESIS PROTEIN 18 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2331 Ssu-Chr5 65922616 65923473 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2331 - - gmx:100820087 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1821 9 55571599 55572453 Ssu5g2331 5 65922616 65923473 PCT