Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2323 ATGGCCACCAGCGTGGAGAGGGATGTGGAGAACACGAACCATGAAGAACTGAAGCATCTTGGCTTTGTGAAAATTGCGGCAATTAaagtttttgtgtgtgtgtcgAATCTCTACGACTACGCAAAGCAAAACTCAGGACCTTTGAGATCTGCTGTTGGAACCGTGGAAGACACTGTCACTACCGTTCTGGGCCCCGTCTACCACAAATTTAAGGGTGTTCCTAACCATCTCCTCCTTTTTGTGGACAATAAGGTGGATGAAGCTACCCACAAATTCGACGAGCATGCTCCACCTTTGGTTAAGCAGGTTGCAAGCCAAGTTAATTGTTTGGTTCAGGAAGTGACACACACAGCGGAGAAAGTTGTGAGTGAGGCTCAGTCTGGAGGGGCACGGGCAGCTGCACATTATGTTGCCGCAGAGACCAAGCAAATTGTGCTATTTGGTTCAGTGAAATTGTGGAATGGTCTCAACCACTACCCACCATTCCATGCAGTGGCAGAGATGGCAGTTCCCACTGCTGCACACTGGTCAGAAAAGTACAACAATGTGATCAAGGGAATGAGTGAAAAGGGATGTGCTGTGTTTGGGTATTTGCCTTTGATTCCAGCTGATGACATAGCTAAGGCGTTTAAACAGGGAGAAGCCAATGTGAATGAAAATGAAGCAGGTTACGAGGGAGAGAGTTCTTATTGA 693 0.4589 MATSVERDVENTNHEELKHLGFVKIAAIKVFVCVSNLYDYAKQNSGPLRSAVGTVEDTVTTVLGPVYHKFKGVPNHLLLFVDNKVDEATHKFDEHAPPLVKQVASQVNCLVQEVTHTAEKVVSEAQSGGARAAAHYVAAETKQIVLFGSVKLWNGLNHYPPFHAVAEMAVPTAAHWSEKYNNVIKGMSEKGCAVFGYLPLIPADDIAKAFKQGEANVNENEAGYEGESSY 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2323 230 PANTHER RUBBER ELONGATION FACTOR-RELATED 4 225 - -
Ssu5g2323 230 Pfam Rubber elongation factor protein (REF) 12 212 IPR008802 -
Ssu5g2323 230 PANTHER REF/SRPP-LIKE PROTEIN OS05G0151300/LOC_OS05G05940 4 225 IPR008802 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2323 Ssu-Chr5 65785281 65786733 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2323 - - gmx:100499806 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1816 9 55500368 55501845 Ssu5g2323 5 65785281 65786733 PCT