Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1887 ATGGAGGACGTGGAGCGGGTGAAGGCGGAGGCGCTGCAAATAATGGGAGTGTTTCAAGTACTCCCAAGGATCGTCGTTTTCGATCTCGATTACACCCTTTGGCCTTTCTACTGTGAGTGCCGCTCGAAGCGCGACACGCCTTCTTTGTTTCCTCATGCCAGAGGCATCTTGCATGCACTCAAACACGAGAGGATTGATGTTGCCATTGCTTCTAAGTCACCAACTCCTGACATCGCAACCACATTTCTTGACAAACTCAGCATCAGGTCAATGTTTGTCGCCGAGGAAATATTTTACAGCTGGACACACAAAACAGATCATTTTCAGAAAATTCATTCAAGGACTGGGGTCCCCTATAACTCTATGCTCTTCTTTGACGATGACAATAATAACATCCAAGGGGTCTCAAAAATTGGAGTAACAAgcattttggttaaaaatgggGTAAATCTTGGAGCATTCAGAAACGGCCTCACGAAATTTTCTCAAAACAGGAATGCATCAAAGAACAAGCAGAAAAGGCCCAAGTAA 531 0.435 MEDVERVKAEALQIMGVFQVLPRIVVFDLDYTLWPFYCECRSKRDTPSLFPHARGILHALKHERIDVAIASKSPTPDIATTFLDKLSIRSMFVAEEIFYSWTHKTDHFQKIHSRTGVPYNSMLFFDDDNNNIQGVSKIGVTSILVKNGVNLGAFRNGLTKFSQNRNASKNKQKRPK 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1887 176 Gene3D - 6 168 IPR023214 -
Ssu5g1887 176 Pfam Acid Phosphatase 21 163 IPR010036 GO:0016791
Ssu5g1887 176 SFLD C1.5.2: MDP Like 5 170 - -
Ssu5g1887 176 SFLD Haloacid Dehalogenase 5 170 - -
Ssu5g1887 176 PANTHER MAGNESIUM-DEPENDENT PHOSPHATASE-LIKE PROTEIN 1 175 - -
Ssu5g1887 176 TIGRFAM HAD-SF-IIIC: HAD phosphatase, family IIIC 24 138 IPR010033 -
Ssu5g1887 176 SUPERFAMILY HAD-like 23 155 IPR036412 -
Ssu5g1887 176 PANTHER MAGNESIUM-DEPENDENT PHOSPHATASE 1 MDP1 1 175 IPR010036 GO:0016791
Ssu5g1887 176 CDD HAD_MDP-1_like 22 145 IPR035679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1887 Ssu-Chr5 55603655 55606843 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1887 K17619 - gmx:100795199 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1887 5 55603655 55606843 Ssu5g1887 5 55603655 55606843 ECH
Ssu5g1887 5 55603655 55606843 Ssu1g0237 1 5649698 5650527 PCT