Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0237 ATGGAGGAGAAGACGGAGAAGGTGAAGGCTGAGGCACTGCAGATAATTGGAGCGTTTGAGGTTCAGCCAAAGCTCGTCGTCTTCGATCTCGATTACACTCTCTGGCCTTTCTACTGTGAGTGTCGATCGAAGCGTGAAATGCCTTCTCTGTATCCCCACGCCAAAGGCATATTGTTAGCGCTCAAAGAGAAAGGGATCGACGTTGCCATCGCTTCTCGCTCACCAACCGCTGACATAGCAACCGCTTTCCTCAACAAATTGAGCCTCAGATCAATGTTCGTCGCACAGGAAATATATTCCAGTTGGACACATAAAACGGATCATTTTCAGAGAATTCATTCAAGGACCGGTGTCCCCTTCAACTCTATGCTCTTTTTCGATGATGAGAACAGGAACATCCAAGCGGTCTCTAAAATGGGAGTAACAAGCATTTTGGTTGGAGATGGGGTAAATCTTGGGTCGTTAAGGGAGGGCCTTACACAATTTTCTCGAAACTGGAATGCGTCACAGAAGAACAAGCAGAAATGGCTTTCCAAGTACTCTAACAAGCCAGATACTTCCAACCCCGCTGCATGA 576 0.4705 MEEKTEKVKAEALQIIGAFEVQPKLVVFDLDYTLWPFYCECRSKREMPSLYPHAKGILLALKEKGIDVAIASRSPTADIATAFLNKLSLRSMFVAQEIYSSWTHKTDHFQRIHSRTGVPFNSMLFFDDENRNIQAVSKMGVTSILVGDGVNLGSLREGLTQFSRNWNASQKNKQKWLSKYSNKPDTSNPAA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0237 191 CDD HAD_MDP-1_like 23 146 IPR035679 -
Ssu1g0237 191 Gene3D - 5 169 IPR023214 -
Ssu1g0237 191 SFLD C1.5.2: MDP Like 4 171 - -
Ssu1g0237 191 TIGRFAM HAD-SF-IIIC: HAD phosphatase, family IIIC 24 139 IPR010033 -
Ssu1g0237 191 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 4 171 - -
Ssu1g0237 191 PANTHER MAGNESIUM-DEPENDENT PHOSPHATASE 1 MDP1 3 176 IPR010036 GO:0016791
Ssu1g0237 191 SUPERFAMILY HAD-like 23 157 IPR036412 -
Ssu1g0237 191 Pfam Acid Phosphatase 23 42 IPR010036 GO:0016791
Ssu1g0237 191 Pfam Acid Phosphatase 49 164 IPR010036 GO:0016791
Ssu1g0237 191 PANTHER MAGNESIUM-DEPENDENT PHOSPHATASE-LIKE PROTEIN 3 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0237 Ssu-Chr1 5649698 5650527 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0237 K17619 - gmx:100305763 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1887 5 55603655 55606843 Ssu1g0237 1 5649698 5650527 PCT