Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1834 ATGTACTACCATTTGGCCCTATTAAAGGAAAACGGCTGGTTTATGGTAGCAAATGTTGTAAGTCAAAAGTCACACGTAAACGTGAACAAAGAGGTGTTCGAAGAAACTAGAAAACTAGCTTTCTCATTCATAACCGCCATTCTAATTGTTCTATCCATCTTTTGCTATCCCAGTTTCACCAATCTCTTGGAGATGATGGATTATCAGTATATTCTGGGAGGGATTCTGGCTGGTAGTTTGGCTTTTGTGTATGTTGTGTACAGTTTTGGAGGAAAGAAGAAGGCCAGAGATTCAAGTTCAATACATGTAAAAAGAAATGAGTGTGCAAAGACATCAGAGAATGGAATATGTTCACATGAGGCTGCAGGAAGTACTGACATCATCATTGTGGGTGCTGGGGTTGCTGGTGCTGCTCTTGCTTACACACTTGGAAAGGATGGACGGCGAGTGCATGTGATTGAAAGGGATTTGAGTGAACCTGACAGAATCGTGGGTGAATTGCTACAACCTGGGGGCTATCTGAAGTTAATTGAGTTGGGTCTTGAGGATTGTGTGGATGAAATTGATGCTCAGCAAGTCTTTGGCTATGCTCTGTATAAGGATGGCAAAAATACCAAGCTCCCTTATCCCTTGGAAAAATTTAACTCTGATGTTTCTGGGAGAAGCTTTCATAATGGCCGTTTCATACAGAGAATGCGAGAAAAGGCTTCATCTCTTCCGAATGTTAAATTAGAACAAGGAACTGTCACATCTCTACTTGAAGAAAATGGAACCATCACCGGGGTGCACTACAAAACCAAAAGTGGTCAAGAGTTCACAGCAAAGGCTCCCCTCACCATAGTATGTGATGGTTGTTTTTCGAACTTAAGGCGTTCTCTTTGCAATCCTAAGGTTGAAGTACCCTCTCATTTTGTTGGTCTGGTCTTGGAGAATTGTAATCTTCCATATGCAAATCATGGACATGTCATCTTAGGTGATCCTTCACCCATTTTGTTTTATCCCATCAGTAGCACTGAGATTCGCTGTCTGGTTGATGTGCCTGGCCAAAAATTACCTTCCCTTGGTAATGGTGAAATGGCCCGTTATTTGAAAACTGTGGTAGCTCCCCAGGTTCCTCCAGAGCTGTATACTTCTTTTATTGCAGCTGTTGACAAAGGAAACATAAGAACCATGCCTAATAGAAGCATGCCCGCCTCACCTTATCCCACACCTGGTGCCCTTCTAATGGGAGATGCCTTCAATATGCGTCACCCTTTAACCGGAGGAGGAATGACTGTGGCTTTATCTGACATTGTTGTGCTAAGGGACCTACTTAAACCCCTGCATGATCTGCATGATGCCTCTGCTCTTTGCAGATACCTTGAATCATTCTACACCCTGCGCAAGCCAGTGGCATCCACAATAAACACATTAGCTGGGGCATTGTACAAAGTGTTTTGTGCATCTCCTGATCCAGCTAGAAAGGAAATGCGCCAAGCATGTTTTGATTACTTGAGCCTTGGAGGTGTTTTCTCAGATGGACCAATAGCTCTACTCTCTGGTCTAAATCCTCGTCCATTGAGTTTGGTTCTCCATTTCTTTGCGGTGGCTATATATGGTGTTGGCCGCTTGCTGATACCATTTCCTTCTCCAAAACAGATGTGGATTGGAGCTAGATTGATTTCAGGTGCATCAGGCATCATTTTCCCCATCATTAAGGCTGAAGGAGTGAGACAAATGTTCTTCCCAGCAACTGTCCCAGCATATTACAGAACCCCTCCTGTCTATTGA 1770 0.435 MYYHLALLKENGWFMVANVVSQKSHVNVNKEVFEETRKLAFSFITAILIVLSIFCYPSFTNLLEMMDYQYILGGILAGSLAFVYVVYSFGGKKKARDSSSIHVKRNECAKTSENGICSHEAAGSTDIIIVGAGVAGAALAYTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVDEIDAQQVFGYALYKDGKNTKLPYPLEKFNSDVSGRSFHNGRFIQRMREKASSLPNVKLEQGTVTSLLEENGTITGVHYKTKSGQEFTAKAPLTIVCDGCFSNLRRSLCNPKVEVPSHFVGLVLENCNLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSLGNGEMARYLKTVVAPQVPPELYTSFIAAVDKGNIRTMPNRSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRDLLKPLHDLHDASALCRYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGVFSDGPIALLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPKQMWIGARLISGASGIIFPIIKAEGVRQMFFPATVPAYYRTPPVY 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1834 589 Gene3D - 118 505 IPR036188 -
Ssu5g1834 589 SUPERFAMILY FAD/NAD(P)-binding domain 125 500 IPR036188 -
Ssu5g1834 589 Pfam NAD(P)-binding Rossmann-like domain 129 155 - -
Ssu5g1834 589 Pfam Squalene epoxidase 275 547 IPR013698 GO:0004506|GO:0016021|GO:0050660
Ssu5g1834 589 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 126 148 - -
Ssu5g1834 589 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 275 290 - -
Ssu5g1834 589 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 418 434 - -
Ssu5g1834 589 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 403 418 - -
Ssu5g1834 589 PANTHER SQUALENE MONOOXYGENASE 66 588 IPR040125 GO:0004506|GO:0016126
Ssu5g1834 589 PANTHER SQUALENE MONOOXYGENASE-RELATED 66 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1834 Ssu-Chr5 54708553 54711907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1834 102 587 Miscellaneous Gene Families AT1G58440 79.218 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1834 K00511 - gmx:100800329 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1834 5 54708553 54711907 Ssu5g1834 5 54708553 54711907 ECH
Ssu5g1834 5 54708553 54711907 Ssu1g0293 1 6846513 6850104 PCT