Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0293 ATGGGTTATGAGTGTATTCTGGGAGGAATTATAGCTTCTAGTTTGGTGCTTGTGTTTGTTCTACACGGTTCTGAATCAAAGAAGAAGGCCAAAGGTTCAGCACATGCAGAAAGCAATAGTGGTAGTATTATAAGGACatcagaaaatgaaaaacaccaTCAAGAAATCCCAGCAACTATGGACATCATCATTGTCGGTGCTGGGGTTGCTGGCGCAGCCCTTGCTAACACACTTGGGAAGGAAGGGAGGCGAGTGCATGTTATTGAAAGGGAGTTGACTGAACCAGACAGGATTGTGGGGGAATTGCTACAACCTGGGGGTTATCTCAAGTTAATTGAGTTGGGTCTCGAAGATTGTGTGGATGAAATTGACGCTCAGCAAGTCTTTGGCTATGCTCTTTACAAGGACGGGAAAAATACCAAGCTTTCTTATCCCTTGGAAAAATTTGACTCTGATATTTCTGGAAGAAGCTTTCACAATGGCCGTTTCATacagagaatgagagagaaggCTTCATCTCTTCCAAATGTAAAATTAGAACAAGGAACTGTCACATCTCTATTGGAAGAAAATGGAACCATCAAAGGGGTACACTACAGAACCAAAAATGGACAAGAGATCACAGCCAAGGCTCCCCTCACCATAGTATGCGATGGCTGTTTTTCCAACTTGAGACGTTCTCTGTGCAACCCAAAGGTTGATGTGCCATCTCATTTTGTTGGTCTGGTCCTAGAAAACTGCAATCTTCCATATGCAAACCACGGACACGTTATCTTGGGTGATCCTTCTCCCATTTTGTTTTATCCCATAAGTAGCTCTGAGATTCGGTGTTTGGTTGATGTGCCTGGCCCAAAGTTACCTTCCCTTGGTAATGGTGACATGGCCCGTTATTTGAAAACAGTAGTAGCTCCCCAGGTTCCCCCAGAGCTGTGTGCTTCTTTTATAGCTGCAGTTGATAGAGGAAACATAAGAAGCATGCCAAACAGAAGCATGCCCGCATCTCCTTATCCCACACCTGGTGCCCTTCTCATGGGAGATGCCTTCAACATGCGTCACCCTTTAACTGGAGGGGGAATGACTGTGGCTTTGTCTGATATTGTTTTGCTAAGGAACCTTCTTAGACCCCTGCATGATCTGCGTGATGCTTCTGCTCTATGCAAATATCTTGAATTATTCTACACCTTGCGCAAgCCAGTGGCATCTACAATAAACACATTAGCTGGGGCATTATACAAGGTGTTTTGTGCATCTCCTGACCCAGCTAGTAAGGAAATGCGCCAGGCATGTTTTGATTACTTAAGCCTTGGAGGTGTTTTCTCAGATGGACCAATAGCTCTACTCTCTGGTCTAAACCCTCGTCCATTAAGCTTGGTTCTCCACTTCTTTGCCGTCGCTATATATGGTGTTGGCCGCTTACTCATACCATTCCCTTCTCCAAAACGCATGTGGATTGGAGCTAGACTGATTTCCGGTGCCTCTGCTATCATTTTCCCCATTATCAAGGCTGAAGGAATTAGAGAAATGTTCTTCCCGGTAACTGTGCCAGCATATTACAGAACACCTCCTACCAATTTGCATGATTAA 1584 0.4356 MGYECILGGIIASSLVLVFVLHGSESKKKAKGSAHAESNSGSIIRTSENEKHHQEIPATMDIIIVGAGVAGAALANTLGKEGRRVHVIERELTEPDRIVGELLQPGGYLKLIELGLEDCVDEIDAQQVFGYALYKDGKNTKLSYPLEKFDSDISGRSFHNGRFIQRMREKASSLPNVKLEQGTVTSLLEENGTIKGVHYRTKNGQEITAKAPLTIVCDGCFSNLRRSLCNPKVDVPSHFVGLVLENCNLPYANHGHVILGDPSPILFYPISSSEIRCLVDVPGPKLPSLGNGDMARYLKTVVAPQVPPELCASFIAAVDRGNIRSMPNRSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVLLRNLLRPLHDLRDASALCKYLELFYTLRKPVASTINTLAGALYKVFCASPDPASKEMRQACFDYLSLGGVFSDGPIALLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPKRMWIGARLISGASAIIFPIIKAEGIREMFFPVTVPAYYRTPPTNLHD 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0293 527 Pfam NAD(P)-binding Rossmann-like domain 64 90 - -
Ssu1g0293 527 Gene3D - 53 435 IPR036188 -
Ssu1g0293 527 SUPERFAMILY FAD/NAD(P)-binding domain 60 435 IPR036188 -
Ssu1g0293 527 PANTHER SQUALENE MONOOXYGENASE 1 527 IPR040125 GO:0004506|GO:0016126
Ssu1g0293 527 MobiDBLite consensus disorder prediction 30 53 - -
Ssu1g0293 527 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 527 - -
Ssu1g0293 527 Pfam Squalene epoxidase 210 483 IPR013698 GO:0004506|GO:0016021|GO:0050660
Ssu1g0293 527 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 353 369 - -
Ssu1g0293 527 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 210 225 - -
Ssu1g0293 527 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 338 353 - -
Ssu1g0293 527 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 61 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0293 Ssu-Chr1 6846513 6850104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0293 61 523 Miscellaneous Gene Families AT1G58440 79.698 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0293 K00511 - gmx:100796946 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1834 5 54708553 54711907 Ssu1g0293 1 6846513 6850104 PCT