Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1833 ATGGCGGTGGAGTATACGTGCTGCGCACCGGAGTTCTTCGTGCACATACTCGTGATCGTGCTGCTTGTGCTGTTCGCGGGCCTCATGTCGGGCCTCACGTTGGGCCTCATGTCGCTGAGCCTCGTTGATCTTGAGGTCCTCGCTAAGTCTGGTACTCCTCAGGATCGTAAGCACGCTGCGAGGATATTACCTGTTGTCAAAAACCAACATTTATTGCTTTGTACTCTGCTAATTTGCAATGCTGCAGCCATGGAGACACTTCCTATTTTTCTTGATGGTCTTGTTACTGCGTGGGGCGCCATCCTGATTTCGGTgacattaattcttttgttcGGTGAGATTATACCCCAATCAGTTTGTTCTCGGTATGGTTTGGCGATTGGTGCATCAGTGGCTCCCTTTGTCCGTGTGCTTGTATGCATATGTTTTCCAGTTGCTTTTCCAATTAGTAAGTTGTTGGATTTTTTGCTGGGCCATCGACATGAAGCCCTATTCCGTAGAGCTGAGTTGAAGACACTTGTAAATTTGCATGGTAATGAGgcTGGAAAAGGTGGGGAACTGACACATGATGAAACAACTATCATTGCTGGGGCACTTGAACTCAGTGAGAAGACAGCTAGTGATGCTATGACTCCTATATCTGAAACATTTGCCATTGATATTAATTCAAAGCTTGATAGGGAACTGATGAATGAAATATTGGAGGAAGGGCATAGCAGAGTCCCAGTCTATTATGAGCAGCCCACAAACATTATTGGACTTATACTgGTTAAGAATTTATTGACAGTTCATCCAAAAGATGAAGCACCCGTGAAGAGTGTAACCATACGCAGGATTCCAAGGGTTCCAGAAAGTATGCCACTTTATGACATTCTGAATGAGTTCCAGAAGGGCCATAGCCACATGGCAGTTGTTGTGAGACGGTGTGACAAGACGAAGCAACAATCTTCCCAAAATAATGCAAATGACTCGGTGAGAGATGTGAAGGTGGATATTGATGGTGAAAAGCCTCCGCAAGAGAAAGCTTTGAAACCCAAGAAGATGCCACTCCATAAGTGGAAAAGCTTTCCAAATACAAACAAGGCAAATGGGGGTGGTTCTCGGAGCagaaaatggtcaaaaaataTGTACTCGGATATTTTGGAGATAGATGGAAGTCCCCTTCCAAAACTCcctgaagaagaagaagctgttGGAATTATTACGATGGAAGATGTCATTGAAGAGCTTTTACAGGAGGAGATCTTTGATGAGACAGATCATCATTTTGAAGACTCATGA 1281 0.4262 MAVEYTCCAPEFFVHILVIVLLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPQDRKHAARILPVVKNQHLLLCTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSVCSRYGLAIGASVAPFVRVLVCICFPVAFPISKLLDFLLGHRHEALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELSEKTASDAMTPISETFAIDINSKLDRELMNEILEEGHSRVPVYYEQPTNIIGLILVKNLLTVHPKDEAPVKSVTIRRIPRVPESMPLYDILNEFQKGHSHMAVVVRRCDKTKQQSSQNNANDSVRDVKVDIDGEKPPQEKALKPKKMPLHKWKSFPNTNKANGGGSRSRKWSKNMYSDILEIDGSPLPKLPEEEEAVGIITMEDVIEELLQEEIFDETDHHFEDS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1833 426 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 1 426 IPR045095 GO:0010960
Ssu5g1833 426 MobiDBLite consensus disorder prediction 310 371 - -
Ssu5g1833 426 Gene3D - 382 418 IPR046342 -
Ssu5g1833 426 CDD CBS_pair_CorC_HlyC_assoc 205 306 IPR044751 -
Ssu5g1833 426 Gene3D - 191 325 IPR046342 -
Ssu5g1833 426 MobiDBLite consensus disorder prediction 356 371 - -
Ssu5g1833 426 PANTHER AND COBALT EFFLUX PROTEIN CORC, PUTATIVE-RELATED 1 426 - -
Ssu5g1833 426 MobiDBLite consensus disorder prediction 326 346 - -
Ssu5g1833 426 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
Ssu5g1833 426 ProSiteProfiles CBS domain profile. 210 271 IPR000644 -
Ssu5g1833 426 SUPERFAMILY CBS-domain pair 194 412 IPR046342 -
Ssu5g1833 426 Pfam Cyclin M transmembrane N-terminal domain 17 190 IPR002550 -
Ssu5g1833 426 MobiDBLite consensus disorder prediction 310 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1833 Ssu-Chr5 54575604 54581712 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1833 K16302 - gmx:100801937 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1833 5 54575604 54581712 Ssu5g1833 5 54575604 54581712 ECH
Ssu5g1833 5 54575604 54581712 Ssu1g0295 1 6872280 6895719 PCT