Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0295 ATGGCGGTGGAGTATCAGTGTTGTGAAACTCAGTTTTTCATACGCTTACTTATAATTGTGTTGCTGGTGGTGTTTGCTGGATTGATGTCAGGGCTCACTTTAGGGCTCATGTCCTTGAGTCTTGTTGATCTTGAGGTTCTCGCTAAGTCTGGCACCCCGCAGGATCGCAAACATGCCGCAAAGATATTGCCTGTTGTCAGAAATCAACATTTGTTGCTTTGCACCCTTCTAATTTGCAATGCTGCAGCCATGGAGGCACTTCCAATCTTTCTTGATAGTCTTCTTGTTGCGTGGGGTGCTGTCCTGATTTCAGTAACATTAATTCTTCTCTTTGGTGAGATTATACCCCAATCAATTTGTTCTCGGTATGGTTTAGCAATTGGGGCAACAGTGGCTCCATTTGTCCGTGTTCTTGTATGGATATGTTTTCCTGTTGCTTATCCGATTAGCAAGTTGTTGGACTTTTTGCTGGGGCATAGACATGAAGCCCTTTTCCACAGAGCTGAGTTGAAAACACTTGTAAATCTGCATGGCCAAGAGGCTGGAAAAGGTGGGGAACTGACACGTCATGAAACAACAATCATTGCTGGAGCACTGGCACTTGCTGAGAAGACAGCCAGTGATGCCATGACTCCCATAACTGAAACATTCTGTATTGATATTAATTCAAAGCTTGATAGGTATCTGATGAATCTAATGTTGGAGAATGGACATAGCAGAGTCCCTGTCTATTATGAGAAGGCTTCAAATATTATTGGACTTATCCTGGTCAAGAATTTATTGACAGTTGACCCAGAAGATGAAGCACCAGTGAAAAGTGTGACCATACGCAGAATTCCAAGGGTTCCAGAAACGATGCCACTGTATGATATTTTGAAGGAGTTCCAGAAAGGCCATAGCCACATGGCTGTAGTTGTCAGACATTTTCACAAGACACGGGAGCAATCTTCCAACAATAATGCCTTCGGTAAGCACAAGCTATAA 984 0.4319 MAVEYQCCETQFFIRLLIIVLLVVFAGLMSGLTLGLMSLSLVDLEVLAKSGTPQDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDSLLVAWGAVLISVTLILLFGEIIPQSICSRYGLAIGATVAPFVRVLVWICFPVAYPISKLLDFLLGHRHEALFHRAELKTLVNLHGQEAGKGGELTRHETTIIAGALALAEKTASDAMTPITETFCIDINSKLDRYLMNLMLENGHSRVPVYYEKASNIIGLILVKNLLTVDPEDEAPVKSVTIRRIPRVPETMPLYDILKEFQKGHSHMAVVVRHFHKTREQSSNNNAFGKHKL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0295 327 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
Ssu1g0295 327 ProSiteProfiles CBS domain profile. 210 271 IPR000644 -
Ssu1g0295 327 Pfam Cyclin M transmembrane N-terminal domain 17 185 IPR002550 -
Ssu1g0295 327 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 1 323 IPR045095 GO:0010960
Ssu1g0295 327 SUPERFAMILY CBS-domain pair 197 311 IPR046342 -
Ssu1g0295 327 PANTHER AND COBALT EFFLUX PROTEIN CORC, PUTATIVE-RELATED 1 323 - -
Ssu1g0295 327 CDD CBS_pair_CorC_HlyC_assoc 205 312 IPR044751 -
Ssu1g0295 327 Gene3D - 191 323 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0295 Ssu-Chr1 6872280 6895719 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0295 K16302 - gmx:100795897 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1833 5 54575604 54581712 Ssu1g0295 1 6872280 6895719 PCT