Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1213 ATGGAGTACTTCAACAAAGCCAAGGCCGTGAAGCTACGCAGCCACCTCGGCAAGTACCTAGTGGCCGACGAGGACCACGACAAACTCCGTCAAAGCCGAAAAGGGTCCACGAGAAAGGCAACGTGGGCGGTGGAACTAGTGAAGGGGAAAAACCACCGCGTGCGGCTGAGGAGCCCTAACGGCCGTTACCTAACGGCGACGGACGCGCCCTTTCTGCTGGGAGTAACCGGGGACAAGGTGGTTCTGGCCAACTTCGACGCGGGCTTGGATTGGAAATTCGAGTGGGAACCCATAAGGGACGGGTTCCACGTGAAACTGAGGAGCTGGTGCGGGAAGTACCTTAGGGGCAACGGTGGCACGTTACCGTGGAGAAACTCGATCACGCACGATGACCCTTATAGCTCCGTCACGCATAATTGGATCCTGTGGGAGGTGGAGGCCGTGGAGTTTCCCGAGAAAATGGTTTCCTTCGCCGAGAGTGAGTTTTCGTCGCTGGAGTCGGATGGGGAGGTTCCGGGTTCCGAAGAACCGGCCTCGCCCGAGTCGATTTCGTCGTTGCGGAGTCAGAATTCGATGGCGCAGACAACAGCAGGTTCCAACGCCGCCGCCACCTTCCGGTCCGGCATGGAGCTCTTCCACCACGCGAAGGCGGTGCGGCTGCGCAGCCACCACGAGAAGTACCTCCTCGCCGACGAGGACGAGGAATCGGTAACCCAGGACCGGAACGGATCCTCCCGGAACGCGAAGTGGAGCGTGGAGCTGGTGCCGGAATTCAACAACATCATACGGCTCAAGAGCTGTTACGGCAAGTACCTAACGGCGTCGAACCAGCCGCTACTTCTGGGGGTGACGGGCCGCAAGGTGGTCCAGAGCGTGCCGCGGAGGCTCGACTCGTCGGTGGAGTGGGAGCCCATACGGGACGGCGCGCAGGTCAAGCTCAAGACCCGTTACGGGAACTTTCTCCGGGCCAATGGGGGGGTCCCACCGTGGAGGAACTCCGTGACGCACGATATCCCACATAGGACCGCCACACAGGATTGGATCTTGTGGGATGTGGATGTTTTGGAGATCCACGTTGAGTCCCCTGCTCCTCCTCCCATTCCTCACTCCGATTCTCTCGATTTCGATTCCTCTACTCCTTCTGCTGATTCCGTCAAACCAGCCACCTTCTCCAGGCAAGAGTCGACGGATTCAAATGTGGGTTCGCCACCGAAGATGGAGGGGAGGACTATATACTACCATGTCGCGGAGGATAACGGGGATGTGGATGATGAGAATGTGCAGGGctattctttgattttcaaaGGGAATGGGGTTGAGCAGTTGACTCGGAAGTTTGAGGAACAGACGGGGCTTGAGGGAGTTATTGTGTGCACTCGAAGTCCTTTGAATGGAAAACTCTACCCTCTTCGCTTACAGCTTCCTCCAAACAACGTGACCATGCAAGTTGTTTTGGTTCTTCCCTCATCTAAAGTGGCAAAAGACTTTGAGGAGCAAGGTCTACTGTGA 1509 0.5679 MEYFNKAKAVKLRSHLGKYLVADEDHDKLRQSRKGSTRKATWAVELVKGKNHRVRLRSPNGRYLTATDAPFLLGVTGDKVVLANFDAGLDWKFEWEPIRDGFHVKLRSWCGKYLRGNGGTLPWRNSITHDDPYSSVTHNWILWEVEAVEFPEKMVSFAESEFSSLESDGEVPGSEEPASPESISSLRSQNSMAQTTAGSNAAATFRSGMELFHHAKAVRLRSHHEKYLLADEDEESVTQDRNGSSRNAKWSVELVPEFNNIIRLKSCYGKYLTASNQPLLLGVTGRKVVQSVPRRLDSSVEWEPIRDGAQVKLKTRYGNFLRANGGVPPWRNSVTHDIPHRTATQDWILWDVDVLEIHVESPAPPPIPHSDSLDFDSSTPSADSVKPATFSRQESTDSNVGSPPKMEGRTIYYHVAEDNGDVDDENVQGYSLIFKGNGVEQLTRKFEEQTGLEGVIVCTRSPLNGKLYPLRLQLPPNNVTMQVVLVLPSSKVAKDFEEQGLL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1213 502 MobiDBLite consensus disorder prediction 372 403 - -
Ssu5g1213 502 SUPERFAMILY Actin-crosslinking proteins 5 149 IPR008999 -
Ssu5g1213 502 Gene3D - 217 336 - -
Ssu5g1213 502 PANTHER ACTIN CROSS-LINKING PROTEIN 195 499 - -
Ssu5g1213 502 PANTHER ACTIN CROSS-LINKING PROTEIN 1 149 - -
Ssu5g1213 502 MobiDBLite consensus disorder prediction 178 200 - -
Ssu5g1213 502 MobiDBLite consensus disorder prediction 165 200 - -
Ssu5g1213 502 SUPERFAMILY Actin-crosslinking proteins 212 354 IPR008999 -
Ssu5g1213 502 Gene3D - 5 149 - -
Ssu5g1213 502 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 1 149 - -
Ssu5g1213 502 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 195 499 - -
Ssu5g1213 502 MobiDBLite consensus disorder prediction 361 406 - -
Ssu5g1213 502 Pfam Domain of unknown function (DUF569) 1 143 IPR007679 -
Ssu5g1213 502 Pfam Domain of unknown function (DUF569) 209 350 IPR007679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1213 Ssu-Chr5 39799099 39806748 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1213 - - gmx:100785006 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1668 2 65683589 65691034 Ssu5g1213 5 39799099 39806748 PCT