Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1207 ATGGATTATCAGCTGATACAGGTAGTTGCACTGTTGACAGTGATGGCATTTGGAGGCACATATTGGACTATAGAAGCCTGCAGTCTCAATGACTTGGAAGCTTTGATGAGTTTCAAGAATGGAATTCAAAAGGATACATCTGGCCGCTTAGCCAAGTGGGTTGGTCAGAGCTGCTGCAAGTGGGAAGGTATTGTATGTGAAAATGGAACCTCTAGGGTGACACAGATCAATCTCCCAGGATTCATTTCCACAGATACAGATTTATTTCAAACACAAATGACAGGGTGGATTTCTCCTTCCATAACACTCCTCACCTCCCTTGAAATCATTGATCTTGGTGGTTTAGTTGGTCTTGGTGGAACAATTCCACACACCATTGGTTTGCACTTGCCAAAGCTCCAAAAGCTCTACCTTTATGGCAACAATTTAACAGGTCCAATACCAGAAAGCATTGGAGAGTTGTCAAACCTCCAAGAACTGGCTCTGCAGGAAAATAGGCTATCCGGGTTGATCCCTGTGAGCCTTGGAAGCCTAAAAAGTCTCGAAAGGTTGCTGCttcattcaaatcaattttcagGTATAATACCAGACTCACTTGGgaatttgataaatttggtAGAATTGGATGTTCATGACAATGCTCTTATGGGTAACATACCCAATAGTGTTGGTGAGATGAAGGCTTTGCAAAAGCTTGATCTTTCAAACAATTTGTTAAGGGGGAAGATACCTTCTTCATTAACCAATTTAAGTGCCATTTCAGTTTTGTACCTGAACACCAACTATCTTGAGGGAACCATCCCATTTCCTTCAAGATCTGGTGAAATGACTTCTTTGGGCTTCTTAAGACTCCATAATAATCTCCTTGTAGGAAATATACCTTCCAATATTGGCTATTTGGTATCTCTTCAAAGAGTTTCATTATCAAACAACAAACTTGAAGGAGCACTGCCTTCTAGTTTAGGCAATTTGGTATCACTGACTGAGTTATATCTCAGTGGTAACTTCTTATCTGCCCAAATACCAAAATCAGTAGGCCAACTCTCTCAGCTCATAATGTTGAACATCTCTAGAAATTTGGTTGAAGGGCCATTACCCCAAGAGATGTCTTCCCTTCAAAATCTTCAAGCACTTGATCTGTCTTTCAACCATCTGAATCTCTCTGCCATCCCAAAATGGATAGCAAACATGTCATCACTTTCCAGCATTTACTTTGCTGGTTGTGGAATCCAGGGCCAAATTCcagatttttttcaaacaaccaATAGTCCAATACAGGAACTGGACTTGTCAGTGAACCTTCTCAGTGGAAGCATACCATCATGGATAGGAAACCTCAATCAACTCTACATGTTAAATCTCTCAAGAAACTCTCTTCATTCATACATCCCTGATTCAATTAGAAATTTGCAAGATCTAAGTGTCCTTGATCTTCACTCAAATAGGCTTACAGGCTCCATAGCTCCAGTATTTGACATAGAACAAGGCATTTCTGGGGGATCCCTAAAATTCGTTGATCTTTCTGATAACAACTTCTCAAGGGGAATTGAGAAAATTGGTGTAGGAGGGCAATGTGATATTCAGTTTCTGAATTTATCTCATAACCTTGTGAAAGGTAGGTTACCAAATTCAATTGGGAGATTGAATTCACTTAACAGTTTGGATTTGAGCTTCAATGAATTAGGCTCCAACTTGCCAAAGGCACTGGCAAATTTAACCTCATTGGAGAGATTGAAGCTGCAGGATAATCACTTCACTGGTAAAATTCCCAACGGATTTCTCAAGTTGTTAAAGCTGAAGGAATTAAACTTATCTAACAATCTTCTTGAAGGGGAAATTCCAGAGGGCAAACCTTTGATTGACTTTCCTGAGAGTTCATATTCTGGAAATAAAGGGTTATGTGGAAAGCCTCTCAGTCCTTGTAAACTTTGA 1932 0.3908 MDYQLIQVVALLTVMAFGGTYWTIEACSLNDLEALMSFKNGIQKDTSGRLAKWVGQSCCKWEGIVCENGTSRVTQINLPGFISTDTDLFQTQMTGWISPSITLLTSLEIIDLGGLVGLGGTIPHTIGLHLPKLQKLYLYGNNLTGPIPESIGELSNLQELALQENRLSGLIPVSLGSLKSLERLLLHSNQFSGIIPDSLGNLINLVELDVHDNALMGNIPNSVGEMKALQKLDLSNNLLRGKIPSSLTNLSAISVLYLNTNYLEGTIPFPSRSGEMTSLGFLRLHNNLLVGNIPSNIGYLVSLQRVSLSNNKLEGALPSSLGNLVSLTELYLSGNFLSAQIPKSVGQLSQLIMLNISRNLVEGPLPQEMSSLQNLQALDLSFNHLNLSAIPKWIANMSSLSSIYFAGCGIQGQIPDFFQTTNSPIQELDLSVNLLSGSIPSWIGNLNQLYMLNLSRNSLHSYIPDSIRNLQDLSVLDLHSNRLTGSIAPVFDIEQGISGGSLKFVDLSDNNFSRGIEKIGVGGQCDIQFLNLSHNLVKGRLPNSIGRLNSLNSLDLSFNELGSNLPKALANLTSLERLKLQDNHFTGKIPNGFLKLLKLKELNLSNNLLEGEIPEGKPLIDFPESSYSGNKGLCGKPLSPCKL 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1207 643 SMART LRR_sd22_2 372 389 - -
Ssu5g1207 643 SMART LRR_sd22_2 548 567 - -
Ssu5g1207 643 SMART LRR_sd22_2 226 252 - -
Ssu5g1207 643 SMART LRR_sd22_2 130 156 - -
Ssu5g1207 643 SMART LRR_sd22_2 202 221 - -
Ssu5g1207 643 SMART LRR_sd22_2 422 448 - -
Ssu5g1207 643 SMART LRR_sd22_2 324 350 - -
Ssu5g1207 643 ProSiteProfiles Leucine-rich repeat profile. 598 620 IPR001611 GO:0005515
Ssu5g1207 643 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 3 642 - -
Ssu5g1207 643 SUPERFAMILY L domain-like 424 639 - -
Ssu5g1207 643 Gene3D Ribonuclease Inhibitor 271 343 IPR032675 -
Ssu5g1207 643 SUPERFAMILY L domain-like 187 487 - -
Ssu5g1207 643 Gene3D Ribonuclease Inhibitor 29 190 IPR032675 -
Ssu5g1207 643 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 642 - -
Ssu5g1207 643 Gene3D Ribonuclease Inhibitor 191 269 IPR032675 -
Ssu5g1207 643 Pfam Leucine rich repeat 425 483 IPR001611 GO:0005515
Ssu5g1207 643 Pfam Leucine rich repeat 131 191 IPR001611 GO:0005515
Ssu5g1207 643 Pfam Leucine Rich Repeat 229 250 IPR001611 GO:0005515
Ssu5g1207 643 Pfam Leucine Rich Repeat 598 614 IPR001611 GO:0005515
Ssu5g1207 643 Pfam Leucine Rich Repeat 574 596 IPR001611 GO:0005515
Ssu5g1207 643 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
Ssu5g1207 643 Gene3D Ribonuclease Inhibitor 354 643 IPR032675 -
Ssu5g1207 643 SUPERFAMILY L domain-like 56 241 - -
Ssu5g1207 643 PRINTS Leucine-rich repeat signature 229 242 - -
Ssu5g1207 643 PRINTS Leucine-rich repeat signature 372 385 - -
Ssu5g1207 643 SMART LRR_typ_2 446 469 IPR003591 -
Ssu5g1207 643 SMART LRR_typ_2 572 595 IPR003591 -
Ssu5g1207 643 SMART LRR_typ_2 372 397 IPR003591 -
Ssu5g1207 643 SMART LRR_typ_2 324 348 IPR003591 -
Ssu5g1207 643 SMART LRR_typ_2 548 571 IPR003591 -
Ssu5g1207 643 SMART LRR_typ_2 178 201 IPR003591 -
Ssu5g1207 643 SMART LRR_typ_2 470 500 IPR003591 -
Ssu5g1207 643 SMART LRR_typ_2 596 618 IPR003591 -
Ssu5g1207 643 SMART LRR_typ_2 130 152 IPR003591 -
Ssu5g1207 643 SMART LRR_typ_2 300 323 IPR003591 -
Ssu5g1207 643 SMART LRR_typ_2 226 250 IPR003591 -
Ssu5g1207 643 SMART LRR_typ_2 154 177 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1207 Ssu-Chr5 39725182 39727113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1207 2 643 Receptor kinase-like Gene Family AT4G08850 31.838 5.29e-85 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1207 - - gmx:102670178 1093.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1675 2 65809723 65811660 Ssu5g1207 5 39725182 39727113 PCT