Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1675 ATGGCTTATCAGCTGCTACAGATAGTTGCACTGCTGACAGTGGTGACATTAGGAGGAGCAATAAGGAAAGCAACAGGAGCATGCAGTTCAGATGACCTGGAAGGTTTGATGGGCTTCAAGAATGGCATTCAGATGGATACATCTGGCCGCTTGGCAAAGTGGGTTGGTAGGAGCTGCTGTGAGTGGGAAGGTATTGTCTGTGACAATGCCACCACTAGAGTGACACAGATCCATCTCCCAGGGCTCATTGAAAAAGATTTGTTTCAAACCCAAATGGTTGGCCAGCTTTCTCCTTCAATAACTCTCCTCACCTCTCTTGAAATCCTTGACCTTGGTGGCTTAGTGGGCCTCAGTGGAACCATTCCACAAACCATTGGTTTGCAAATGCCAAAGCTCCAAAAGCTCTACCTTTATGGCAACAATTTTACTGGCCCAGTACCAGAAAGCATTGGTGATTTGCCAAACCTCCAGGAACTGGCACTGCATGAAAATAGGATATCTGGGTCAATCCCTTCTAGCCTTGGAAGCTTTAGAAACCTCAAAAGGTTGATGCTTTACTCAAACCAAATTTCAGGTACAATACCCCTCACACTTGGGAATTTGACCAATTTGGTAGAATTGGATGTTCATGACAATGCTCTTATGGGTCATATACCCAACAGCATTGGTCAAATGCAGGCCCTGGAAAAGCTTGATCTTTCAAGCAATATGCTAAGTGGAAGCATACCTTCTTCACTCACCAATTTAACTGCCATTTCAGTTTTGTACATGGACACCAACTATCTTGTGGGAACCATCCCATTTCCCTCAAGATCTGGTGAAATGCCTTATCTGGGCTTCTTAAGACTCCATAATAACCATCTTAGTGGAGATATACCTCCCAGTTTTGGCTACCTGGTTTCTCTTCAAAGAGTTTTATTATCAAACAACAAATTAGAAGGAGCATTGCCTTCTAGTTTGGGCAATTTGCACTCTTTGACACAGCTTTACCTCAGTGGCAACTCCTTGTCTGGCCAAATACCAAAATCAATAGGCCGACTCTCTCAGCTCATAATGTTGAACatttccaataatttgattGAATGGCCATTGCCTCAAGAGATGTCTTCCCTTCAAAACCTTCAGGCACTTGATATTTCTTTCAACCCTTTGAACCTCTCTTCCATCCCACCATGGCTAACAAGCCTATCATCCCTTTCCCGCATTTACCTTGCAGGCTGTGGCATCAAGGGCCAAATTCCAGACTTTTTGCAAACAACACAGAGTCCAATACAGGAACTGGACTTGTCAGTGAACCTTCTCAGTGGACCCATACCATCATGGATAGGGTCCCTTAGTCAGCTCTACTTGTTAAACCTCTCAAGGAATTCACTTGATTCACACATACCTGATGCCCTCAAAAACTTGCCTGATCTTGGTGTTCTTGATCTTCACTCAAATAAGTTAACAGGCTCCATTACTGGAGTATTTGACACTGAACAAGGCAATTCTGGGGGATCACTAACATACATTGATCTTTCTGATAACAACTTCTCAAGTGGAGTTGAGGCAATTGGTGTGGGAGGCCAGTTGAATATTCAGTACCTGAATTTATCTCATAACCTTCTGAAGGGTACATTGCCAAGTTCCCTTGGGAGACTCAATTCCATTCACAGTTTGGATTTGAGCTTCAATGAATTAGCCTCCAACTTGCCAGAGGTGCTGGAAAAGTTGACCTTGTTGGAGAGACTGAAGCTGCAAAGCAACCACTTCAGTGGTAATATACCCAGTGGATTTCTCAAGTTGAGAAAGCTGAAGGAATTGGACTTATCGGATAATGTACTTGAAGGGGAAATTCCAGAGGGTAAACCTCTAATTGACTTTCCTGGGAGTACTTATTCTGGAAACAAAGGTTTGTGCGGGAAGCCTCTTAGTCCCTGTAAACTTCGAGGATTGTAA 1938 0.4329 MAYQLLQIVALLTVVTLGGAIRKATGACSSDDLEGLMGFKNGIQMDTSGRLAKWVGRSCCEWEGIVCDNATTRVTQIHLPGLIEKDLFQTQMVGQLSPSITLLTSLEILDLGGLVGLSGTIPQTIGLQMPKLQKLYLYGNNFTGPVPESIGDLPNLQELALHENRISGSIPSSLGSFRNLKRLMLYSNQISGTIPLTLGNLTNLVELDVHDNALMGHIPNSIGQMQALEKLDLSSNMLSGSIPSSLTNLTAISVLYMDTNYLVGTIPFPSRSGEMPYLGFLRLHNNHLSGDIPPSFGYLVSLQRVLLSNNKLEGALPSSLGNLHSLTQLYLSGNSLSGQIPKSIGRLSQLIMLNISNNLIEWPLPQEMSSLQNLQALDISFNPLNLSSIPPWLTSLSSLSRIYLAGCGIKGQIPDFLQTTQSPIQELDLSVNLLSGPIPSWIGSLSQLYLLNLSRNSLDSHIPDALKNLPDLGVLDLHSNKLTGSITGVFDTEQGNSGGSLTYIDLSDNNFSSGVEAIGVGGQLNIQYLNLSHNLLKGTLPSSLGRLNSIHSLDLSFNELASNLPEVLEKLTLLERLKLQSNHFSGNIPSGFLKLRKLKELDLSDNVLEGEIPEGKPLIDFPGSTYSGNKGLCGKPLSPCKLRGL 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1675 645 Pfam Leucine Rich Repeat 228 249 IPR001611 GO:0005515
Ssu2g1675 645 Gene3D Ribonuclease Inhibitor 352 643 IPR032675 -
Ssu2g1675 645 Gene3D Ribonuclease Inhibitor 82 269 IPR032675 -
Ssu2g1675 645 Gene3D Ribonuclease Inhibitor 25 81 IPR032675 -
Ssu2g1675 645 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 3 641 - -
Ssu2g1675 645 SMART LRR_sd22_2 547 566 - -
Ssu2g1675 645 SMART LRR_sd22_2 371 388 - -
Ssu2g1675 645 SMART LRR_sd22_2 595 618 - -
Ssu2g1675 645 SMART LRR_sd22_2 225 251 - -
Ssu2g1675 645 SMART LRR_sd22_2 323 349 - -
Ssu2g1675 645 SUPERFAMILY L domain-like 27 312 - -
Ssu2g1675 645 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 641 - -
Ssu2g1675 645 SMART LRR_typ_2 595 617 IPR003591 -
Ssu2g1675 645 SMART LRR_typ_2 547 570 IPR003591 -
Ssu2g1675 645 SMART LRR_typ_2 225 249 IPR003591 -
Ssu2g1675 645 SMART LRR_typ_2 129 152 IPR003591 -
Ssu2g1675 645 SMART LRR_typ_2 469 492 IPR003591 -
Ssu2g1675 645 SMART LRR_typ_2 571 594 IPR003591 -
Ssu2g1675 645 SMART LRR_typ_2 201 224 IPR003591 -
Ssu2g1675 645 SMART LRR_typ_2 445 468 IPR003591 -
Ssu2g1675 645 SMART LRR_typ_2 371 396 IPR003591 -
Ssu2g1675 645 SMART LRR_typ_2 153 177 IPR003591 -
Ssu2g1675 645 SMART LRR_typ_2 323 347 IPR003591 -
Ssu2g1675 645 SMART LRR_typ_2 299 322 IPR003591 -
Ssu2g1675 645 SUPERFAMILY L domain-like 275 613 - -
Ssu2g1675 645 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Ssu2g1675 645 Pfam Leucine rich repeat 424 482 IPR001611 GO:0005515
Ssu2g1675 645 Pfam Leucine rich repeat 281 336 IPR001611 GO:0005515
Ssu2g1675 645 Pfam Leucine rich repeat 500 560 IPR001611 GO:0005515
Ssu2g1675 645 Pfam Leucine rich repeat 154 214 IPR001611 GO:0005515
Ssu2g1675 645 Gene3D Ribonuclease Inhibitor 270 351 IPR032675 -
Ssu2g1675 645 PRINTS Leucine-rich repeat signature 228 241 - -
Ssu2g1675 645 PRINTS Leucine-rich repeat signature 595 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1675 Ssu-Chr2 65809723 65811660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1675 6 642 Receptor kinase-like Gene Family AT4G08850 31.924 2.67e-86 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1675 - - gmx:100799647 1139.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1675 2 65809723 65811660 Ssu2g1675 2 65809723 65811660 ECH
Ssu2g1675 2 65809723 65811660 Ssu5g1207 5 39725182 39727113 PCT