Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1109 ATGGACATGGCGGTAGATGTGTTTCCATGGACAAAATCAAAACCCAGGAAGACACAGCCTCGTTCTGTTGGTGGAACAAGACAACACAAATGTGGACAAACACACACAAATTTGTCAAGGAAACGAAGTTTCCCAAACATGGATTTTAGCCTGTGTTTGCGCTCCCCAATCATTTCCCTCCTTGTACATTTCCTCCTTGTCGTTTCTACCCTTTGTCCTGTTCATTCCTCACAATTGGGTAGCCACCCAGTTGCCAATCAAACTTTTCGCCCAAAGGAAGAGTTGGGCAAGTTGAACACCATAAAAAATCGTCTTCGGCAAATCAACAAGCCCGCTCTTAAGACAATTCAGAGTCCTGATGGTGATGTAATAGACTGTGTTGTGTCTCATAAGCAACCGGCTTTTGATCATCCTCTACTGAAAGGACACAAACCattggaTTCTCCAGAAAGGCCAAGAGGCCATAACCAAATGGGTGATTTGAGTGATAACTTTCAGTTGTGGAGCTTATCTGGCGAGTCGTGTCCCGAAGGAACAATTCCGATTAGAAGAACAACGGAGCAAGACATGTTAAGAGCTAGCTCTGTTCGCAgatttggaaggaaaaaaataataaaccgTGTCAGAAGGGACACCACCGGCAATGGACATGAGCATGCAATTGGGTATGTGACGGGGGATCAGTACTACGGAGCAAAGGGTAGCATAAACGTGTGGGCACCCCTTGTAGAAAACCCATATGAATTCAGCTTGTCTCAAATGTGGGTCATTTCTGGTTCATTTGGGGATGATCTCAACACCATTGAAGCTGGTTGGCAGGCATGTTACTATCATTACTTCATCTTAATTAATTCCCCGGAGCTATATGGGGACAGCTACCCTAGATTCTTTACTTATTGGACGACTGATGCATATCAAGCAACTGGGTGTTACAATTTACTCTGCTCGGGGTTTATTCAAACAAACAGTAAAATTGCAATTGGAGCAGCAATCTCTCCAACTTCTTCATATGGTGGTGGGCAATTTGATATTAGCTTACTCATTTGGAAGGATCCAAAGCATGGGAATTGGTGGCTTGAATTTGGATCCGGGATCCTAGTTGGGTACTGGCCATCCTTCTTGTTCACCCACTTAGGGGATCATGCAAGCATGATTCAATTTGGTGGAGAAGTAGTGAATTCAGGGTCATCAGGGTCTCACACTTCCACCCAAATGGGTAGTGGACATTTTGCGGAGGAGGGTTTTGCAAAAGCTTCATACTTTAGGAATATGCAAGTTGTGGATTATGACAACAACTTGATTCCCTTGTCAAATCTAAAGGTTCTAGCAGATCACCCGAATTGCTATGACATACAAGGAGGGTTTAATAATGCGTGGGGGAATTATTTTTACTATGGTGGACCGGGCAGAAATGTCAAGTGTCCCTAA 1428 0.4314 MDMAVDVFPWTKSKPRKTQPRSVGGTRQHKCGQTHTNLSRKRSFPNMDFSLCLRSPIISLLVHFLLVVSTLCPVHSSQLGSHPVANQTFRPKEELGKLNTIKNRLRQINKPALKTIQSPDGDVIDCVVSHKQPAFDHPLLKGHKPLDSPERPRGHNQMGDLSDNFQLWSLSGESCPEGTIPIRRTTEQDMLRASSVRRFGRKKIINRVRRDTTGNGHEHAIGYVTGDQYYGAKGSINVWAPLVENPYEFSLSQMWVISGSFGDDLNTIEAGWQACYYHYFILINSPELYGDSYPRFFTYWTTDAYQATGCYNLLCSGFIQTNSKIAIGAAISPTSSYGGGQFDISLLIWKDPKHGNWWLEFGSGILVGYWPSFLFTHLGDHASMIQFGGEVVNSGSSGSHTSTQMGSGHFAEEGFAKASYFRNMQVVDYDNNLIPLSNLKVLADHPNCYDIQGGFNNAWGNYFYYGGPGRNVKCP 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1109 475 MobiDBLite consensus disorder prediction 11 34 - -
Ssu5g1109 475 Pfam Neprosin 248 468 IPR004314 -
Ssu5g1109 475 MobiDBLite consensus disorder prediction 15 34 - -
Ssu5g1109 475 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 48 475 - -
Ssu5g1109 475 Pfam Neprosin activation peptide 115 223 IPR025521 -
Ssu5g1109 475 Gene3D - 242 363 - -
Ssu5g1109 475 PANTHER - 48 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1109 Ssu-Chr5 35506297 35510072 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1109 - - gmx:100788950 863.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1109 5 35506297 35510072 Ssu5g1109 5 35506297 35510072 ECH
Ssu2g1814 2 69168708 69172807 Ssu5g1109 5 35506297 35510072 PCT