Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1100 ATGGCAACATACAACACGGTGGTCGAAGACGACAGAGAAGCTCCCATCCGCGGAGACATCTTGGAGGCCATATTCTCCCACGTGCCGCTCATCCACTTGGTCCCAGCCTCTCACGTGTCAAACACCTGGAAGCGTGCGGTATCCGCCTCCCTCCGCCACGTCAACCCTGCCAAGCCGTGGCTCACGGTGCACACCCAGAGCCCCCGTGCCCCGCACGTGACAAACACCTTCGCGTACGACCCACGCTCGCGCGCGTGGCTCGAGATCCACGCGCCGCACCCCAACCACTCCGCAGCCCTCCGCGCGTCGCACTCCACCCTCCTCTACACGCTCTCTCCCTCCGAGTTCGCCTTCTCCCTCGACCCCCTCCGCCTCAAGTGGCACCACGCGCGCGCCCCGAGCGTGTGGCGCACCGACCCCATCGTCGCGCGCGTGGGGAACTCCTTCGTCGTGGCTGGCGGCGCGTCCGACTTCGAGGACGATCCCCTCGCGGTGGAGGTGTACGACCTTCAGTCCCGCGCGTGGAGCCGGTGCGAGTCCATGCCGGAGATGCTCAAACGCTCCACCGCATCGACGTGGCACTCGGTGGCCCTCGCCGGAGAGAAGATGCACGTGACGGAGAAAAGCTCCGGCGTGACGCACTCGTTCGACTGTGCAACGATGACGTGGCAGGGGCCGTATGACCTGCGTCCGGATGAGAACGTCTTCTACTGCGTCACGGGAACGATACGCGGTCGTTTGATGGTGGCGGGGATGGTGGGGGATAATGAGAACGTGAGTGAGGTGAAGTTGTGGGAAGTGAAAGGGGAATTAGGGTTGGGAAGTGAATTAGGGTTTTGGTGTGAGGAGTTTGGTGCGGCTCCGAAGGAGATGGTGGTGAAGTTGATGGGTGCGGATGGTTGTTCTTGTGGTGCGGTGGGGTCCATTGAGGTGAATTGGATTGGGGATTTTGTGTATTTTCGGAACCGTACGGAACCGGAGGAGATGGTTGTGTGCGTGGTTGGGAGTGGGGGAGGGTGTGAGTGGGGGAGCGTGAGGAACGTGACGGTGAACGACGCGAGTCGCATGGGGAGAATGGTGTTTTGTGGTGGCCATGTGGGGGTTGAGGATTTGCAGAGGGCGATTAAGGAGAATTGTAGGTTTGTGGAAAAAGTAACTTGA 1161 0.6115 MATYNTVVEDDREAPIRGDILEAIFSHVPLIHLVPASHVSNTWKRAVSASLRHVNPAKPWLTVHTQSPRAPHVTNTFAYDPRSRAWLEIHAPHPNHSAALRASHSTLLYTLSPSEFAFSLDPLRLKWHHARAPSVWRTDPIVARVGNSFVVAGGASDFEDDPLAVEVYDLQSRAWSRCESMPEMLKRSTASTWHSVALAGEKMHVTEKSSGVTHSFDCATMTWQGPYDLRPDENVFYCVTGTIRGRLMVAGMVGDNENVSEVKLWEVKGELGLGSELGFWCEEFGAAPKEMVVKLMGADGCSCGAVGSIEVNWIGDFVYFRNRTEPEEMVVCVVGSGGGCEWGSVRNVTVNDASRMGRMVFCGGHVGVEDLQRAIKENCRFVEKVT 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1100 386 Pfam F-box domain 19 48 IPR001810 GO:0005515
Ssu5g1100 386 Gene3D - 60 271 IPR015915 GO:0005515
Ssu5g1100 386 SUPERFAMILY Kelch motif 59 265 IPR015915 GO:0005515
Ssu5g1100 386 PANTHER KELCH REPEAT-CONTAINING F-BOX-LIKE PROTEIN 10 375 - -
Ssu5g1100 386 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 10 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1100 Ssu-Chr5 34886654 34887814 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1100 - - gmx:100799807 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1805 2 68900839 68901936 Ssu5g1100 5 34886654 34887814 PCT