Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1069 atgattactattaaaaaagGTTGGTTTCACTGGTCGCGACTTACCAGACAAAAACCCGTTCACCCCGAAGGCTTACGTGGCACGCTATTGGGACAAACACATCAGCAACAACTTGCCAAAGCCATCGCTCCTTCTTTCCAAGGCCTCCCCACTGAGCGCCGCCGAATCGGCGTCGTTCGCCAAGCTCGCCGCCACCAACACCCTCTCCACGCGGTTGCGGAGTTCTGCTCCGCCGCACACCTCCTCTGCTTCCCGGAGGTGCCACCCAGCCTCGAGAAACACACCGAAGACGTAGGCTTCCAAACGTACAACGACGGCCAGAACTTCACCAACTACGGAACGAGTCGACCCGGCGGACTCGACTCGTTCAAAAACTACTCCAACAGCTTCTTCAGCATTCCCGTGAACGATTTCCGACGGTACAGCCGCCGCTCCGCCGGCCACGTGGACAGCTTCGTCAACTACGCAAACGACACCAACGTCGCCGACGAGAGTTTCCACACCTACGGCACCAACGCAGCCGGCGGCTCCGGCGAGTTCAAACAGTACGCGGGCGATTCAAACGTCCCAGACCTACGATTCACCACCTACTCAGACAGCACCGGCGGGAGGACGCAATCGTTTTCGACCTACAGCGAGGATGGCAACGCCGGCGGCCAGACTTTCAGGAGCTACGGCAAGAACTCCGCCGGCGCGGCGAACGAGTTCAGCCGGTACGGGACAAACGCCAACGTTGCCTCCTCTAGTTTCACGAACTACGGCAAGGGAGGTGCGGGTCCCAACGACACGTTCGCGAACTACGGCGTTAACATGAACGTCCCCGAAGAGAACTTCAAGAGCTACGCAGACGGAACCGTTGGTGGGTCCGAGAGTTTTTCAAACTACAGGGACGGGTCTAACGTGGGTGACGACTCGTTCGAATCGTATGCTAAGAACACGAAAGAAGGGAGCCAAGTGGATTTCAATAACTACGGGAATTCCGCCAACCCAGGTACGGACACTTTCATAGGGTACGCTAAAGGAGCCGAAGGGGATCACAAGGTGGGTTTCACGCGTTACGGCGTTAACACTAACACTACGTTTAAGGATTACGCCAAAGAGGGCGTCTCCTTCGCCAGTTACAACACCTCTGTTAGTGGCAGTCTGGTAAAAAGGTGGGTTGAACCCGGTAAATTCTTTCGCGAGAAGATGCTAAAAGAAGGAACCGTTATGCCGATGCCAGATATAAGGGATAAAATGCCGCAAAGGTCGTTCTTGCCCCGCTCCATTTCGTCCAAATTGCCCTTCTCATCTTCTAAGGTTGACGAGTTGAAGCGCGTGTTCAAGGTGTCCGATAACTCCTCTATGGACAAGATGATCATGGACTCGTTGGGTGAGTGCGAGAGGGCTCCCAGCGTAGGCGAGACCAAGCGCTGCGTGGGCTCCGTTGAAGATATGATTGATTTTGCAACCTCCGTTTTGGGCCATAATGTCGCGGTTTGGACCACGGAGAATGTAAATGGGTTTAATAAAAACGTTATGGTGGGTCGGGTCAAAGGGATGAACGTTGGGAAAGTGACCAAATCGGTGTCGTGCCATCAGAGCCTGTTCCCATACTTGCTTTACTACTGCCACTCCGTCCCTAAGGTTCGGGTCTACGAAGCAGATCTTTTGGACCCGGAATCGAAGGCCAAGTTTAACCACGGTGTTGCTATTTGTCACTTGGACACCACTGCATGGAGCCCCACCCACGGTGCATTCTTGGCTCTTGGCTCGGCTCCGGGTCGGATTGAAGTGTGCCATTGGATCTTTGAAAATGACATGACTTGGACTATTGCTGATTGA 1824 0.5389 MITIKKGWFHWSRLTRQKPVHPEGLRGTLLGQTHQQQLAKAIAPSFQGLPTERRRIGVVRQARRHQHPLHAVAEFCSAAHLLCFPEVPPSLEKHTEDVGFQTYNDGQNFTNYGTSRPGGLDSFKNYSNSFFSIPVNDFRRYSRRSAGHVDSFVNYANDTNVADESFHTYGTNAAGGSGEFKQYAGDSNVPDLRFTTYSDSTGGRTQSFSTYSEDGNAGGQTFRSYGKNSAGAANEFSRYGTNANVASSSFTNYGKGGAGPNDTFANYGVNMNVPEENFKSYADGTVGGSESFSNYRDGSNVGDDSFESYAKNTKEGSQVDFNNYGNSANPGTDTFIGYAKGAEGDHKVGFTRYGVNTNTTFKDYAKEGVSFASYNTSVSGSLVKRWVEPGKFFREKMLKEGTVMPMPDIRDKMPQRSFLPRSISSKLPFSSSKVDELKRVFKVSDNSSMDKMIMDSLGECERAPSVGETKRCVGSVEDMIDFATSVLGHNVAVWTTENVNGFNKNVMVGRVKGMNVGKVTKSVSCHQSLFPYLLYYCHSVPKVRVYEADLLDPESKAKFNHGVAICHLDTTAWSPTHGAFLALGSAPGRIEVCHWIFENDMTWTIAD 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1069 607 MobiDBLite consensus disorder prediction 197 223 - -
Ssu5g1069 607 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 71 607 - -
Ssu5g1069 607 SMART BURP_2 390 606 IPR004873 -
Ssu5g1069 607 ProSiteProfiles BURP domain profile. 392 606 IPR004873 -
Ssu5g1069 607 Pfam BURP domain 392 604 IPR004873 -
Ssu5g1069 607 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 71 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1069 Ssu-Chr5 33663153 33666994 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1069 - - var:108321369 947.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1773 2 68367438 68369440 Ssu5g1069 5 33663153 33666994 PCT