Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1061 ATGGCTGATGAGAGCGTTGTTGAGTCCCCAGTGAAGAGGCAAAGAGATGATGAAGAAAATGGGGTCTCTGTTTCCATGGACATGGAGGGTGGCAAAGACCCTCATGGTAATGGTTTATCATCTGTGATTCCTGGGTGGTTCTCTGAAATCAGTTCAATGTGGCCCGGGGAGGCTCACTCCTTGAAGGTGGAAAAGATTTTGTTTCAAGGAAAGTCTGAATACCAGAATGTCATGGTCTTCCAGTCATCAACATATGGTAAGGTTCTTGTTCTGGATGGAGTAATTCAGCTAACAGAAAGGGACGAATGTGCCTACCAAGAAATGATCACTCATCTTCCTCTTTGCTCTATTCCAAACCCAAAAAAGgtttTGGTTATCGGTGGAGGTGATGGAGGGGTCATCCGAGAAGTAGCACGCCATTCTTCCGTTGAAAAGATAGACATTTGTGAAATTGACAATATGGTTATTGATGTTTCCAAACAATATTTCCCTGATGTAGCTGTAGGGTATGAGGATCCTCGTGTGACACTTCATATTGGTGATGGAGTTGCATTTCTGAAGGAGGTTCCAGAAGGAACTTATGATGCTGTTATAGTGGATTCATCCGACCCTATTGGTCCTGCTCAGGAGCTTTTCGAAAAGCCCTTCTTTGAGTCGGTTGCAAAGGCTCTTCGTCCAGGAGGAGTTGTGTGTACTCAGGCAGAAAGCATATGGCTTCATATGAATATAATTGAGGACATCGTGGCCAATTGTTGCCAGATTTTTAAAGGCTCTGTCAACTATGCTTGGACTACAGTTCCTACATACCCAAGtGGAATGATTGGTTTTATGCTTTGCTCAACTGAGGGACCACCTGTTGATTTCAAGCATCCAGTGAATCCCATAGATGAAAATGAGTGTCAGAAGTCAGTAAGACCTCTGAAATTTTACAACTCTGAGCAGCTTTCTGTTTGCCATCGTTTGCTAAGAGGAAGATTGGTCCTAAAGCAAATTGAGAAGATTTTCAAGAGCTTCAAGGAGCTCATGTGGCAGTTGTGGAAGTCCAACATTCATCCTTGCTGGATTGGTCCATCTATCAATGAACCATGGAATAAGTTAGAGCTTAAATTTGGCATTAAAGAGTGA 1125 0.4293 MADESVVESPVKRQRDDEENGVSVSMDMEGGKDPHGNGLSSVIPGWFSEISSMWPGEAHSLKVEKILFQGKSEYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVIREVARHSSVEKIDICEIDNMVIDVSKQYFPDVAVGYEDPRVTLHIGDGVAFLKEVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVCTQAESIWLHMNIIEDIVANCCQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPPVDFKHPVNPIDENECQKSVRPLKFYNSEQLSVCHRLLRGRLVLKQIEKIFKSFKELMWQLWKSNIHPCWIGPSINEPWNKLELKFGIKE 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1061 374 CDD AdoMet_MTases 144 233 - -
Ssu5g1061 374 TIGRFAM speE: spermidine synthase 46 311 IPR001045 GO:0003824
Ssu5g1061 374 Pfam Spermine/spermidine synthase domain 102 289 - -
Ssu5g1061 374 MobiDBLite consensus disorder prediction 1 37 - -
Ssu5g1061 374 Gene3D Spermidine synthase, tetramerisation domain 38 96 IPR037163 -
Ssu5g1061 374 PANTHER SPERMIDINE SYNTHASE-RELATED 1 314 - -
Ssu5g1061 374 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 123 136 IPR030373 -
Ssu5g1061 374 Pfam Spermidine synthase tetramerisation domain 45 99 IPR035246 -
Ssu5g1061 374 Hamap Polyamine aminopropyltransferase [speE]. 45 327 IPR001045 GO:0003824
Ssu5g1061 374 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 314 IPR001045 GO:0003824
Ssu5g1061 374 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 44 281 IPR030374 -
Ssu5g1061 374 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 42 313 IPR029063 -
Ssu5g1061 374 MobiDBLite consensus disorder prediction 1 22 - -
Ssu5g1061 374 Gene3D Vaccinia Virus protein VP39 97 334 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1061 Ssu-Chr5 33350997 33354715 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1061 K00797 - gmx:100776863 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1061 5 33350997 33354715 Ssu5g1061 5 33350997 33354715 ECH
Ssu2g1765 2 68229065 68232027 Ssu5g1061 5 33350997 33354715 PCT