Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1765 ATGGCTGCGGAGAGCGTAGTTGAGTTCACAGACTTACCCGTCAAGAGGCAAAGAGAAGACGGCGAAGAAAATGGCGTCTCCGACGCCGTTTCTACGCTCCCCAATGACCCTCAGCACCCCGGTATATCGGCGGTTATTCCCGGTTGGTTCTCCGAAATCAGCCCAATGTGGCCCGGGGAGGCGCATTCCTTGAAGGTGGAAAAGATTCTGTTTCAAGGAAAGTCTGATTATCAGAATGTCATGGTCTTTCAGTCATCAACATATGGCAAGGTTCTTGTTCTGGATGGAGTCATTCAGCTCACGGAAAGGGATGAGTGTGCCTACCAAGAGATGATCACTCACCTTCCTCTTTGCTCTATTCCAAACCCCAAAAAGGTTTTGGTTATTGGTGGAGGAGATGGTGGAGTCCTGCGGGAAGTATCACGCCATTCCTCAGTAGAGAAGATAGACATTTGCGAAATAGACAAGATGGTTGTTGATGTCTCCAAACAATATTTCCCCGATATAGCAGTAGGTTTTGAAGACCCACGTGTGACACTTAATATTGGTGATGGAGTTGCATTTTTGAAGGCTGCTCCAGAAGGAACTTATGATGCAATTATAGTGGATTCATCCGATCCTATAGGTCCTGCTCAAGAACTGTTTGAAAAGCCTTTTTTCGAGTCAGTTGCAAAGGCTCTTCGTCCAGGAGGAGTTCTGTGTACTCAAGCCGAAAGTATATGGCTTCATATGCATATCATTGAGGATATTGTGGCTAATTGTCGCCAGATATTCAAAGGTTCTGTCAACTATGCTTGGACCACGGTTCCTACGTACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACTGAGGGGCCTCCTGTTGACTTCAAGCATCCAGTGAATCCTATAGATGAGAATGATAGTCAGCAGTCAACAAGACCATTGAAATTTTATAACTCTGAGATTCATACAGCGGCTTTCTGTTTGCCGTCTTTTGCTAAGAGGGCTATAGGTTCTAAAGCAAATTGA 1014 0.4536 MAAESVVEFTDLPVKRQREDGEENGVSDAVSTLPNDPQHPGISAVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQYFPDIAVGFEDPRVTLNIGDGVAFLKAAPEGTYDAIIVDSSDPIGPAQELFEKPFFESVAKALRPGGVLCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPPVDFKHPVNPIDENDSQQSTRPLKFYNSEIHTAAFCLPSFAKRAIGSKAN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1765 337 Gene3D Vaccinia Virus protein VP39 102 337 IPR029063 -
Ssu2g1765 337 PIRSF Spermidine_synth 38 337 IPR030668 GO:0006595
Ssu2g1765 337 MobiDBLite consensus disorder prediction 1 37 - -
Ssu2g1765 337 Gene3D Spermidine synthase, tetramerisation domain 29 101 IPR037163 -
Ssu2g1765 337 Pfam Spermidine synthase tetramerisation domain 48 102 IPR035246 -
Ssu2g1765 337 PANTHER SPERMIDINE SYNTHASE-RELATED 1 337 - -
Ssu2g1765 337 Pfam Spermine/spermidine synthase domain 105 292 - -
Ssu2g1765 337 TIGRFAM speE: spermidine synthase 49 327 IPR001045 GO:0003824
Ssu2g1765 337 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 337 IPR001045 GO:0003824
Ssu2g1765 337 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 47 284 IPR030374 -
Ssu2g1765 337 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 45 332 IPR029063 -
Ssu2g1765 337 MobiDBLite consensus disorder prediction 11 25 - -
Ssu2g1765 337 CDD AdoMet_MTases 125 236 - -
Ssu2g1765 337 Hamap Polyamine aminopropyltransferase [speE]. 48 333 IPR001045 GO:0003824
Ssu2g1765 337 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 126 139 IPR030373 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1765 Ssu-Chr2 68229065 68232027 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1765 K00797 - gmx:100792107 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1765 2 68229065 68232027 Ssu2g1765 2 68229065 68232027 ECH
Ssu2g1765 2 68229065 68232027 Ssu5g1061 5 33350997 33354715 PCT