Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1054 ATGAATGGAAGTCGTACGCTTCTCgtcacttctttcttcttccttgcaCTCCCTTGCTACTTCTCGCCAAGGTGTGGAGGCATGGCTTCTCTTTCTACCTTCCTCACTCTcactctcttcctcttctcgCACGtTAAGGCCAAAGATGTCGTCATCCCCGAAGACGGTTACACCGTGACCACTGTGTTCGACGGCCACAAGCCTCACATCTATCCCTTCACCGTCCTCCAACTACCCGTTTCCTCCGATCTCATCCTTCTCGATTCTGTCAACAGCACTTTCTACACCGCGCAATTCCCCATTTCCCAAGCTCGGTTTGCCAAGCCCAGAAGTTTTGCTATTGATCTGAGAGGGAATGTGTATGTTGCTGACAGGTCCAACCACGCAATAAGGAAAATCAGCGCCAAGGGTGTGACCACAATTGCTGGAGGAGGGTACTCTGAAAAGTCAAACAGAAAGGATGGACCTGCACTGAGTGCATCGTTTTCAAATGATTTTGATCTGACTTTCATTCCTGGCCTGTGTGCTTTGCTGGTGTCAGATCACATGCATCAATTGCTCCACCAGATTAATTTGAAGGAGGAGGATTGTAGCCTTGGTTCCAAATCTGGGCTCGGTGCAGTTTTAACTTGGACTCTAGCATTAGGACTTTCATGCGTAGTGGGCTTAGTAATTGGGTTTGTAGTGCGCCCTTACATCCTCCCTAATGTAAGTTCCTCTCAACTTCTTGTGAAGATTTTATATTGCCTAAGAGTAAAATTACTTACACCTTGTCCAACTGAGCTGTGTAGACAGAAAGGCTCCAACCATTGCCACTTCATAGAGACATGGAAGCATTGCCTAACCAGTCTGGGGAAGCTACTACCGATTCTCTTCTTCGGCGCCAAAAGCGCGATTGCTAGCCGTATTTGCTCCTCTGTTTGCACAGTCCTGATGAGACTTGGTAGATTGTGTCTCTGTCATCTTGACTGCATGTTTAGAATTAGAGTCAACATAGTTTCTTCAAGGCCACATTTGGAATCTGTGTCGTTGCTAGATTTAGATGCCTGCAATAGTGGTGAGGTATCAAAGCCAAGTAACTATCATGACCAATTGAAGGATTTGATGAGTTTTGATGAAGATTCAACCAATGCAACCTTCAACAAAGGAAATGATAGCATAGGAAGGAGGAATGTGTGCCATGATGGTGATGTCATGATAAAGGCTAACATGGGCTTTGTAGAGCCACCTAAAGATAACATTCTTCATCAAGAATCGTCTGTGTGTAATTTGGGTGTTGTGAAGCGTAGATGA 1293 0.4393 MNGSRTLLVTSFFFLALPCYFSPRCGGMASLSTFLTLTLFLFSHVKAKDVVIPEDGYTVTTVFDGHKPHIYPFTVLQLPVSSDLILLDSVNSTFYTAQFPISQARFAKPRSFAIDLRGNVYVADRSNHAIRKISAKGVTTIAGGGYSEKSNRKDGPALSASFSNDFDLTFIPGLCALLVSDHMHQLLHQINLKEEDCSLGSKSGLGAVLTWTLALGLSCVVGLVIGFVVRPYILPNVSSSQLLVKILYCLRVKLLTPCPTELCRQKGSNHCHFIETWKHCLTSLGKLLPILFFGAKSAIASRICSSVCTVLMRLGRLCLCHLDCMFRIRVNIVSSRPHLESVSLLDLDACNSGEVSKPSNYHDQLKDLMSFDEDSTNATFNKGNDSIGRRNVCHDGDVMIKANMGFVEPPKDNILHQESSVCNLGVVKRR 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1054 430 PANTHER - 30 410 - -
Ssu5g1054 430 PANTHER NHL DOMAIN-CONTAINING PROTEIN 30 410 - -
Ssu5g1054 430 SUPERFAMILY NHL repeat 106 191 - -
Ssu5g1054 430 Gene3D - 90 186 IPR011042 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1054 Ssu-Chr5 33173997 33179499 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1054 - - gmx:100816542 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1054 5 33173997 33179499 Ssu5g1054 5 33173997 33179499 ECH
Ssu2g1761 2 68129372 68132388 Ssu5g1054 5 33173997 33179499 PCT